Resource

Id Histone_ChIP-seq/ENCSR624YTOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR624YTO [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR624YTO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001608/
  • biosample_summary: Homo sapiens foreskin fibroblast male newborn
  • date_created: 2015-09-15T20:26:43.273061+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR624YTO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR624YTO float

Histone_ChIP-seq_ENCSR624YTO
Histone_ChIP-seq ENCSR624YTO [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR624YTO [1.53, 15.3]
n
118,934,698
mean
4.57
sd
1.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1189346983.70% 164855
chr1 4993264 2.01% 6651
chr2 9270490 3.83% 13553
chr3 5678243 2.86% 9041
chr4 8096766 4.26% 12650
chr5 8496363 4.68% 12167
chr6 5138728 3.01% 7456
chr7 10152109 6.37% 12941
chr8 7904108 5.45% 10364
chr9 3398541 2.46% 5257
chr10 7049637 5.27% 9003
chr11 5059259 3.75% 7409
chr12 4943667 3.71% 6455
chr13 4763734 4.17% 7022
chr14 4356074 4.07% 6003
chr15 3680943 3.61% 4861
chr16 5315193 5.88% 7176
chr17 2218305 2.66% 3023
chr18 3716945 4.62% 5250
chr19 4156454 7.09% 5210
chr20 2474958 3.84% 3496
chr21 2960330 6.34% 4131
chr22 3009954 5.92% 2684
chrX 1821464 1.17% 2627
chrY 279169 0.49% 425
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 164855 185 49151 721.45 558
global segment-length histogram

Files

Filename Size md5
ENCFF148JRE.bed.gz 3.18 MB 2787a9acf6495ca1a17719a792becd39
ENCFF148JRE.tabix.bed.gz 1.57 MB 492367c5203aa1399bf1f4242d234098
ENCFF148JRE.tabix.bed.gz.tbi 249.81 KB 87ef0128b0ecaf05380e338453f56b51
genomic_resource.yaml 1.46 KB 9e9278022b175ba25fcfec2f51b9c8e1
statistics/