Resource
| Id | Histone_ChIP-seq/ENCSR623GZY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR623GZY [biosample_summary="Homo sapiens DOHH2" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN699FQA|/analyses/ENCAN699FQA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN699FQA|/analyses/ENCAN699FQA/} has in progress subobject document {9b6221be-30ce-4d73-95a7-3b63e8298626|/documents/9b6221be-30ce-4d73-95a7-3b63e8298626/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF466HZZ|/files/ENCFF466HZZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF466HZZ|/files/ENCFF466HZZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.32. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR623GZY | float |
Histone_ChIP-seq_ENCSR623GZY |
Histone_ChIP-seq ENCSR623GZY [biosample_summary="Homo sapiens DOHH2" and target="H3K79me2"]
|
 |
[1.61, 44.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 130365308 | 4.05% | 85897 |
| chr1 | 11688614 | 4.70% | 7702 |
| chr2 | 9703717 | 4.01% | 6523 |
| chr3 | 8882740 | 4.48% | 5794 |
| chr4 | 5848270 | 3.07% | 3788 |
| chr5 | 6382596 | 3.52% | 4077 |
| chr6 | 6930743 | 4.06% | 4580 |
| chr7 | 8093410 | 5.08% | 5068 |
| chr8 | 5971145 | 4.11% | 3681 |
| chr9 | 5356149 | 3.87% | 3598 |
| chr10 | 6122847 | 4.58% | 4089 |
| chr11 | 5672028 | 4.20% | 3822 |
| chr12 | 6367124 | 4.78% | 4370 |
| chr13 | 3244277 | 2.84% | 1941 |
| chr14 | 4367364 | 4.08% | 2825 |
| chr15 | 4435376 | 4.35% | 3040 |
| chr16 | 4929597 | 5.46% | 3319 |
| chr17 | 6399752 | 7.69% | 4352 |
| chr18 | 2933485 | 3.65% | 1929 |
| chr19 | 5494783 | 9.37% | 3806 |
| chr20 | 3545264 | 5.50% | 2216 |
| chr21 | 1282294 | 2.75% | 802 |
| chr22 | 3543236 | 6.97% | 2264 |
| chrX | 2952638 | 1.89% | 2176 |
| chrY | 217859 | 0.38% | 135 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 85897 | 200 | 116694 | 1517.69 | 659 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF023NNT.bed.gz | 2.04 MB | 611e1c1fb4c1e76b9e3ad30c35797947 |
| ENCFF023NNT.tabix.bed.gz | 924.35 KB | 96b33287a3cfd64d2573d9fb06fdb085 |
| ENCFF023NNT.tabix.bed.gz.tbi | 114.21 KB | 8d4ab7ca2ea80a7f1d1e77c718803a72 |
| genomic_resource.yaml | 2.91 KB | 0f3e29fe8f4c79743fdb1da33d88683f |
| statistics/ |