Histone_ChIP-seq_ENCSR623GZY
Histone_ChIP-seq ENCSR623GZY [biosample_summary="Homo sapiens DOHH2" and target="H3K79me2"]
×
| Id: | Histone_ChIP-seq/ENCSR623GZY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR623GZY [biosamplesummary="Homo sapiens DOHH2" and target="H3K79me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN699FQA|/analyses/ENCAN699FQA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN699FQA|/analyses/ENCAN699FQA/} has in progress subobject document {9b6221be-30ce-4d73-95a7-3b63e8298626|/documents/9b6221be-30ce-4d73-95a7-3b63e8298626/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF466HZZ|/files/ENCFF466HZZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF466HZZ|/files/ENCFF466HZZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.32. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR623GZY | float |
Histone_ChIP-seq_ENCSR623GZY |
Histone_ChIP-seq ENCSR623GZY [biosample_summary="Homo sapiens DOHH2" and target="H3K79me2"]
|
|
[1.61, 44.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF023NNT.bed.gz | 2.04 MB | 611e1c1fb4c1e76b9e3ad30c35797947 |
| ENCFF023NNT.bed.gz.dvc | 101.0 B | 36d1a24c0fdefbf5e7c1cbe2ff902d31 |
| ENCFF023NNT.tabix.bed.gz | 924.35 KB | 96b33287a3cfd64d2573d9fb06fdb085 |
| ENCFF023NNT.tabix.bed.gz.dvc | 106.0 B | 53475b5a0efc101b6ecae97a6efe4a86 |
| ENCFF023NNT.tabix.bed.gz.tbi | 114.21 KB | 8d4ab7ca2ea80a7f1d1e77c718803a72 |
| ENCFF023NNT.tabix.bed.gz.tbi.dvc | 110.0 B | 02bafea60dfdbdf71dcf4270214b37f9 |
| genomic_resource.yaml | 2.91 KB | 0f3e29fe8f4c79743fdb1da33d88683f |
| genomic_resource_original.yaml | 2.8 KB | 71a4f176330f0c09ff9010ea6819240d |
| statistics/ |