Resource

Id Histone_ChIP-seq/ENCSR622MUHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR622MUH [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue male adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR622MUH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years)
  • date_created: 2022-05-11T01:55:01.875336+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR622MUH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR622MUH float

Histone_ChIP-seq_ENCSR622MUH
Histone_ChIP-seq ENCSR622MUH [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue male adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR622MUH [1.88, 81.7]
n
65,896,689
mean
33.6
sd
20.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 658966892.05% 40480
chr1 6389681 2.57% 3880
chr2 4569058 1.89% 2849
chr3 3849156 1.94% 2233
chr4 2708578 1.42% 1635
chr5 3355032 1.85% 1969
chr6 3780702 2.21% 2304
chr7 3228490 2.03% 2087
chr8 2652544 1.83% 1663
chr9 2709592 1.96% 1753
chr10 2877407 2.15% 1803
chr11 3543610 2.62% 2039
chr12 3521829 2.64% 2071
chr13 1530269 1.34% 1008
chr14 2047704 1.91% 1202
chr15 2069279 2.03% 1298
chr16 2527484 2.80% 1608
chr17 3570716 4.29% 2183
chr18 1245903 1.55% 810
chr19 3880906 6.62% 2413
chr20 1718973 2.67% 1087
chr21 664636 1.42% 435
chr22 1502696 2.96% 941
chrX 1891301 1.21% 1172
chrY 61143 0.11% 37
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40480 190 37437 1627.88 1053
global segment-length histogram

Files

Filename Size md5
ENCFF337HUP.bed.gz 977.11 KB 955643a02d5645371b1a679e69537d33
ENCFF337HUP.tabix.bed.gz 443.57 KB 0e3008ba6ddc56aff1398e0b0a9732ba
ENCFF337HUP.tabix.bed.gz.tbi 217.27 KB f7c0ac5966c807d3d021a46c6910f5ef
genomic_resource.yaml 1.74 KB 3eddcb6bef1ea7a5bd8d46856d0ac3f2
statistics/