Histone_ChIP-seq_ENCSR621MTP
Histone_ChIP-seq ENCSR621MTP [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (37 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR621MTP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR621MTP [biosamplesummary="Homo sapiens esophagus muscularis mucosa tissue male adult (37 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN014WCS|/analyses/ENCAN014WCS/} has in progress subobject document {ba8e9633-00c7-4437-9be9-b43ea446e90c|/documents/ba8e9633-00c7-4437-9be9-b43ea446e90c/} audit_internal_action: Released analysis {ENCAN014WCS|/analyses/ENCAN014WCS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF006WFO|/files/ENCFF006WFO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF006WFO|/files/ENCFF006WFO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR621MTP | float |
Histone_ChIP-seq_ENCSR621MTP |
Histone_ChIP-seq ENCSR621MTP [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (37 years)" and target="H3K4me3"]
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[1.97, 104] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF659CVN.bed.gz | 785.1 KB | 39a0addbe10091990e5ca51035ec2542 |
| ENCFF659CVN.bed.gz.dvc | 100.0 B | 91c8dfe31fcf0fc565545ae295743ca0 |
| ENCFF659CVN.tabix.bed.gz | 338.0 KB | dea4a12d9cd2a1538576ccb344b977e1 |
| ENCFF659CVN.tabix.bed.gz.dvc | 106.0 B | baf70c90e2abc5e3274a4af1228fff18 |
| ENCFF659CVN.tabix.bed.gz.tbi | 180.25 KB | 0702898df2678c8b331cd69206f80a2e |
| ENCFF659CVN.tabix.bed.gz.tbi.dvc | 110.0 B | 94fb81b3bd6a10c08dee3722e8bd998f |
| genomic_resource.yaml | 3.03 KB | 855465c43e68a0d891d37034bf1d8363 |
| genomic_resource_original.yaml | 2.88 KB | 32dceada5dac4ae1171f57b10ecf386f |
| statistics/ |