Histone_ChIP-seq_ENCSR621ECQ
Histone_ChIP-seq ENCSR621ECQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR621ECQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR621ECQ [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (55 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN022SYI|/analyses/ENCAN022SYI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed unfiltered alignments file {ENCFF275AEI|/files/ENCFF275AEI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 39116561 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF280WHW|/files/ENCFF280WHW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF280WHW|/files/ENCFF280WHW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR621ECQ | float |
Histone_ChIP-seq_ENCSR621ECQ |
Histone_ChIP-seq ENCSR621ECQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K9me3"]
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[1.8, 11.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF783WEE.bed.gz | 549.41 KB | 71c59986ba245681576a098337be88f1 |
| ENCFF783WEE.bed.gz.dvc | 100.0 B | e4c32a5e5e7d4fc82d738491bf77df28 |
| ENCFF783WEE.tabix.bed.gz | 278.42 KB | 0aba7a3064e48582552955215789523c |
| ENCFF783WEE.tabix.bed.gz.dvc | 106.0 B | 84da530b224230d001f60f6aa3c3cd1a |
| ENCFF783WEE.tabix.bed.gz.tbi | 161.42 KB | 7a15ac3958d29602f33ac7a6fef47acd |
| ENCFF783WEE.tabix.bed.gz.tbi.dvc | 110.0 B | 44fa959c0c183753206c8ec1b3f657f2 |
| genomic_resource.yaml | 3.28 KB | ecd6e69b4f86357d89d27776b1e5d65e |
| genomic_resource_original.yaml | 3.13 KB | f23e92798168227e1ad10884fc862a5e |
| statistics/ |