Resource
| Id | Histone_ChIP-seq/ENCSR615ECV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR615ECV [biosample_summary="Homo sapiens BLaER1 120 hours after the\ \ sample was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10\ \ ng/mL CSF1" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: 120 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR615ECV | float |
Histone_ChIP-seq_ENCSR615ECV |
Histone_ChIP-seq ENCSR615ECV [biosample_summary="Homo sapiens BLaER1 120 hours after the\ \ sample was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10\ \ ng/mL CSF1" and target="H3K36me3"]
|
 |
[1.42, 16.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 242363237 | 7.53% | 220140 |
| chr1 | 23123994 | 9.29% | 20666 |
| chr1_KI270711v1_random | 5241 | 12.42% | 6 |
| chr2 | 19198208 | 7.93% | 18742 |
| chr3 | 15321791 | 7.73% | 14819 |
| chr4 | 10208249 | 5.37% | 10637 |
| chr5 | 13758824 | 7.58% | 12848 |
| chr6 | 10699875 | 6.26% | 11481 |
| chr7 | 12743197 | 8.00% | 12162 |
| chr8 | 11283931 | 7.77% | 9237 |
| chr9 | 10045814 | 7.26% | 9012 |
| chr9_KI270720v1_random | 251 | 0.64% | 1 |
| chr10 | 11178813 | 8.36% | 10504 |
| chr11 | 11484759 | 8.50% | 10015 |
| chr12 | 12559282 | 9.42% | 11109 |
| chr13 | 5011454 | 4.38% | 5240 |
| chr14 | 7922899 | 7.40% | 7322 |
| chr14_GL000194v1_random | 2569 | 1.34% | 5 |
| chr15 | 9084892 | 8.91% | 8243 |
| chr16 | 10513768 | 11.64% | 8020 |
| chr17 | 12493173 | 15.01% | 9916 |
| chr17_GL000205v2_random | 3445 | 1.86% | 7 |
| chr18 | 4327279 | 5.38% | 4558 |
| chr19 | 12648800 | 21.58% | 8259 |
| chr20 | 6587820 | 10.22% | 5136 |
| chr21 | 3011597 | 6.45% | 2532 |
| chr22 | 5112284 | 10.06% | 3966 |
| chrUn_GL000195v1 | 1918 | 1.05% | 6 |
| chrUn_GL000219v1 | 25777 | 14.38% | 23 |
| chrUn_KI270438v1 | 869 | 0.77% | 3 |
| chrUn_KI270751v1 | 357 | 0.24% | 1 |
| chrX | 4001017 | 2.56% | 5660 |
| chrY | 1090 | <0.01% | 4 |
| 3334 contigs with no values (127993424 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 220140 | 250 | 60323 | 1100.95 | 538 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF523UKT.bed.gz | 4.23 MB | 31ea59823bc873d46cd6a8f1a9aaf91b |
| ENCFF523UKT.tabix.bed.gz | 2.09 MB | 139e2342f7ac767d4020ef676a6a195d |
| ENCFF523UKT.tabix.bed.gz.tbi | 211.81 KB | 613da8751331b73ac4e14c53c12ee1e5 |
| genomic_resource.yaml | 3.13 KB | 65e4757141036c92dda627c7eceeace4 |
| statistics/ |