Resource

Id Histone_ChIP-seq/ENCSR612TQHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR612TQH [biosample_summary="Homo sapiens vagina tissue female adult (51 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR612TQH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000996/
  • biosample_summary: Homo sapiens vagina tissue female adult (51 years)
  • date_created: 2019-08-23T14:00:07.242057+00:00
  • date_released: 2019-09-12
  • doi: 10.17989/ENCSR612TQH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR612TQH float

Histone_ChIP-seq_ENCSR612TQH
Histone_ChIP-seq ENCSR612TQH [biosample_summary="Homo sapiens vagina tissue female adult (51 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR612TQH [1.36, 9.94]
n
7,761,009
mean
4.1
sd
1.16

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 77610090.24% 21978
chr1 392852 0.16% 1281
chr1_KI270709v1_random 3874 5.79% 9
chr1_KI270712v1_random 357 0.20% 1
chr2 385067 0.16% 1310
chr2_KI270716v1_random 692 0.45% 2
chr3 336485 0.17% 1137
chr4 427130 0.22% 1255
chr4_GL000008v2_random 3453 1.65% 4
chr5 510344 0.28% 1418
chr5_GL000208v1_random 835 0.90% 3
chr6 261177 0.15% 894
chr7 446659 0.28% 1330
chr8 276833 0.19% 920
chr9 268327 0.19% 774
chr9_KI270719v1_random 697 0.39% 3
chr10 338233 0.25% 1023
chr11 278930 0.21% 913
chr12 413563 0.31% 1059
chr13 133618 0.12% 501
chr14 163059 0.15% 559
chr14_GL000009v2_random 178 0.09% 1
chr14_GL000194v1_random 499 0.26% 1
chr14_GL000225v1_random 4150 1.97% 18
chr14_KI270722v1_random 110 0.06% 1
chr14_KI270723v1_random 367 0.96% 2
chr14_KI270725v1_random 496 0.29% 2
chr15 186256 0.18% 513
chr16 223985 0.25% 601
chr16_KI270728v1_random 410 0.02% 2
chr17 116216 0.14% 345
chr17_GL000205v2_random 1791 0.97% 6
chr17_KI270729v1_random 16841 6.00% 42
chr17_KI270730v1_random 1937 1.72% 8
chr18 118632 0.15% 409
chr19 1689627 2.88% 3093
chr20 114475 0.18% 368
chr21 142161 0.30% 379
chr22 70747 0.14% 239
chr22_KI270732v1_random 1349 3.25% 3
chr22_KI270733v1_random 265 0.15% 1
chr22_KI270735v1_random 2022 4.72% 6
chr22_KI270736v1_random 14785 8.13% 44
chr22_KI270738v1_random 3195 3.22% 13
chrM 823 4.97% 3
chrUn_GL000214v1 180 0.13% 1
chrUn_GL000216v2 340 0.19% 2
chrUn_GL000218v1 299 0.19% 2
chrUn_GL000219v1 1848 1.03% 8
chrUn_GL000224v1 4534 2.52% 12
chrUn_KI270336v1 223 21.73% 1
chrUn_KI270435v1 1083 1.16% 4
chrUn_KI270438v1 8307 7.38% 26
chrUn_KI270442v1 22740 5.80% 68
chrUn_KI270465v1 262 14.77% 1
chrUn_KI270466v1 422 34.23% 2
chrUn_KI270467v1 1301 33.19% 2
chrUn_KI270512v1 671 2.96% 2
chrUn_KI270515v1 158 2.48% 1
chrUn_KI270517v1 861 26.47% 2
chrUn_KI270518v1 222 10.16% 1
chrUn_KI270519v1 1991 1.44% 8
chrUn_KI270538v1 615 0.67% 2
chrUn_KI270584v1 255 5.65% 1
chrUn_KI270588v1 163 2.65% 1
chrUn_KI270589v1 2023 4.55% 5
chrUn_KI270590v1 645 13.77% 2
chrUn_KI270591v1 597 10.30% 2
chrUn_KI270742v1 424 0.23% 2
chrUn_KI270744v1 2224 1.32% 9
chrUn_KI270746v1 155 0.23% 1
chrUn_KI270749v1 775 0.49% 2
chrUn_KI270750v1 181 0.12% 1
chrUn_KI270751v1 1102 0.73% 2
chrUn_KI270754v1 145 0.36% 1
chrUn_KI270756v1 984 1.24% 4
chrUn_KI270757v1 2849 4.00% 7
chrX 343751 0.22% 1277
chrY 5177 0.01% 20
3288 contigs with no values (121337588 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21978 110 7063 353.13 262
global segment-length histogram

Files

Filename Size md5
ENCFF123YWF.bed.gz 387.1 KB c5ced301f0ef9f3b407e42fe5a0f0663
ENCFF123YWF.tabix.bed.gz 204.14 KB eabe7520cab0b42960382117764d491b
ENCFF123YWF.tabix.bed.gz.tbi 122.49 KB 0fbdd6c4c61b381bc621206aeed09338
genomic_resource.yaml 1.49 KB f66e89c0367f45cdfce0a8ea2b3128b8
statistics/