Histone_ChIP-seq_ENCSR611CRY
Histone_ChIP-seq ENCSR611CRY [biosample_summary="Homo sapiens GM23248" and target="H3K79me2"]
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| Id: | Histone_ChIP-seq/ENCSR611CRY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR611CRY [biosamplesummary="Homo sapiens GM23248" and target="H3K79me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN594YTZ|/analyses/ENCAN594YTZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN594YTZ|/analyses/ENCAN594YTZ/} has in progress subobject document {e80da196-1ed6-46cb-b53b-97336adfa162|/documents/e80da196-1ed6-46cb-b53b-97336adfa162/} audit_not_compliant: Processed alignments file {ENCFF134YHA|/files/ENCFF134YHA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 24371716 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF767WIB|/files/ENCFF767WIB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 34597804 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF134YHA|/files/ENCFF134YHA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF134YHA|/files/ENCFF134YHA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.47. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR611CRY | float |
Histone_ChIP-seq_ENCSR611CRY |
Histone_ChIP-seq ENCSR611CRY [biosample_summary="Homo sapiens GM23248" and target="H3K79me2"]
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[1.64, 19.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF053QUN.bed.gz | 1.82 MB | 058fe95616e69c980fb2664cfd73692a |
| ENCFF053QUN.bed.gz.dvc | 101.0 B | 01beb5c5d6db4911e4c9a8411ca68edc |
| ENCFF053QUN.tabix.bed.gz | 796.4 KB | a1ad2ef4581d32461fb7fce84ae864d9 |
| ENCFF053QUN.tabix.bed.gz.dvc | 106.0 B | 07817813642e95b7bedb2cc4182f891a |
| ENCFF053QUN.tabix.bed.gz.tbi | 118.29 KB | e39c3e5cbc45af19a666aa3d91992f29 |
| ENCFF053QUN.tabix.bed.gz.tbi.dvc | 110.0 B | 493b0e18400ebda5f67e7f5001a1887e |
| genomic_resource.yaml | 3.93 KB | 12937c691a62e21977203618d0d02d4f |
| genomic_resource_original.yaml | 3.82 KB | 886c295f9717c79b5114fc3b838f9ee7 |
| statistics/ |