Histone_ChIP-seq_ENCSR611CHC
Histone_ChIP-seq ENCSR611CHC [biosample_summary="Homo sapiens right lobe of liver tissue female child (16 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR611CHC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR611CHC [biosamplesummary="Homo sapiens right lobe of liver tissue female child (16 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female child (16 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN406QRX|/analyses/ENCAN406QRX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF217YRW|/files/ENCFF217YRW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 35343219 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF217YRW|/files/ENCFF217YRW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF217YRW|/files/ENCFF217YRW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.55. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR611CHC | float |
Histone_ChIP-seq_ENCSR611CHC |
Histone_ChIP-seq ENCSR611CHC [biosample_summary="Homo sapiens right lobe of liver tissue female child (16 years)" and target="H3K27me3"]
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[1.9, 10.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF206GAK.bed.gz | 550.65 KB | a338ff3127c871f745e7b78a0b968a88 |
| ENCFF206GAK.bed.gz.dvc | 100.0 B | f4d5e758a04323830fd81157f0193e2d |
| ENCFF206GAK.tabix.bed.gz | 286.86 KB | dc2e27ed42f75674006c6041b448f149 |
| ENCFF206GAK.tabix.bed.gz.dvc | 106.0 B | 1f000b9438ddc458d9bd00d7295db44f |
| ENCFF206GAK.tabix.bed.gz.tbi | 125.1 KB | 43e15a752e021a81e1b4529fa4057aae |
| ENCFF206GAK.tabix.bed.gz.tbi.dvc | 110.0 B | 165ccde14f6c584624de31536e374523 |
| genomic_resource.yaml | 3.29 KB | 20ad26e7e577618280e0ddc6f0a11b85 |
| genomic_resource_original.yaml | 3.14 KB | 7d1baa02f23aae2507cc2e01b518b0c5 |
| statistics/ |