Histone_ChIP-seq_ENCSR608XIG
Histone_ChIP-seq ENCSR608XIG [biosample_summary="Homo sapiens temporal lobe tissue female adult (75 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR608XIG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR608XIG [biosamplesummary="Homo sapiens temporal lobe tissue female adult (75 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN869IWV|/analyses/ENCAN869IWV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF317ZJQ|/files/ENCFF317ZJQ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12213830 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF317ZJQ|/files/ENCFF317ZJQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF317ZJQ|/files/ENCFF317ZJQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.20. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR608XIG | float |
Histone_ChIP-seq_ENCSR608XIG |
Histone_ChIP-seq ENCSR608XIG [biosample_summary="Homo sapiens temporal lobe tissue female adult (75 years)" and target="H3K27ac"]
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[1.75, 78.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF646RMB.bed.gz | 1.32 MB | 8d037c435a498c93db293754e226b1a4 |
| ENCFF646RMB.bed.gz.dvc | 101.0 B | cf0314124bd0ed1f4dab900371cb19cb |
| ENCFF646RMB.tabix.bed.gz | 642.64 KB | 27267a8b156cc11a9b51deb4ff230d32 |
| ENCFF646RMB.tabix.bed.gz.dvc | 106.0 B | 74fe18374197ac6bd7073fd328dd0199 |
| ENCFF646RMB.tabix.bed.gz.tbi | 212.8 KB | 2c6a5c941bdae9a0208c1b738d717a5b |
| ENCFF646RMB.tabix.bed.gz.tbi.dvc | 110.0 B | f649d196de683b2a33889780657d5f8b |
| genomic_resource.yaml | 3.27 KB | c97878e2b93d30b7b0cc87e0b6f5d698 |
| genomic_resource_original.yaml | 3.12 KB | 38cbee3e6fb9f1fdb60f3ef282a3f77c |
| statistics/ |