Resource
| Id | Histone_ChIP-seq/ENCSR608XIG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR608XIG [biosample_summary="Homo sapiens temporal lobe tissue female adult (75 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN869IWV|/analyses/ENCAN869IWV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF317ZJQ|/files/ENCFF317ZJQ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12213830 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF317ZJQ|/files/ENCFF317ZJQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF317ZJQ|/files/ENCFF317ZJQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.20. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR608XIG | float |
Histone_ChIP-seq_ENCSR608XIG |
Histone_ChIP-seq ENCSR608XIG [biosample_summary="Homo sapiens temporal lobe tissue female adult (75 years)" and target="H3K27ac"]
|
 |
[1.75, 78.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 64573929 | 2.01% | 61289 |
| chr1 | 6760561 | 2.72% | 6181 |
| chr2 | 4611232 | 1.90% | 4410 |
| chr3 | 3705912 | 1.87% | 3584 |
| chr4 | 2400586 | 1.26% | 2434 |
| chr5 | 3331074 | 1.83% | 3243 |
| chr6 | 3142914 | 1.84% | 3004 |
| chr7 | 2721179 | 1.71% | 2744 |
| chr8 | 2524201 | 1.74% | 2496 |
| chr9 | 3232623 | 2.34% | 2901 |
| chr10 | 3396023 | 2.54% | 3029 |
| chr11 | 4137393 | 3.06% | 3747 |
| chr12 | 3108611 | 2.33% | 2978 |
| chr13 | 1340293 | 1.17% | 1330 |
| chr14 | 2254306 | 2.11% | 2077 |
| chr15 | 2284414 | 2.24% | 2169 |
| chr16 | 2309752 | 2.56% | 2166 |
| chr17 | 3785170 | 4.55% | 3513 |
| chr18 | 1176898 | 1.46% | 1192 |
| chr19 | 2941308 | 5.02% | 2895 |
| chr20 | 1970901 | 3.06% | 1857 |
| chr21 | 744357 | 1.59% | 734 |
| chr22 | 1702771 | 3.35% | 1533 |
| chrX | 987686 | 0.63% | 1068 |
| chrY | 3764 | 0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 61289 | 285 | 24186 | 1053.6 | 741 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF646RMB.bed.gz | 1.32 MB | 8d037c435a498c93db293754e226b1a4 |
| ENCFF646RMB.tabix.bed.gz | 642.64 KB | 27267a8b156cc11a9b51deb4ff230d32 |
| ENCFF646RMB.tabix.bed.gz.tbi | 212.8 KB | 2c6a5c941bdae9a0208c1b738d717a5b |
| genomic_resource.yaml | 3.27 KB | c97878e2b93d30b7b0cc87e0b6f5d698 |
| statistics/ |