Resource
| Id | Histone_ChIP-seq/ENCSR608FDQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR608FDQ [biosample_summary="Homo sapiens spleen tissue male child (3 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male child (3 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN245IIA|/analyses/ENCAN245IIA/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF346ZGG|/files/ENCFF346ZGG/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15200207 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR608FDQ | float |
Histone_ChIP-seq_ENCSR608FDQ |
Histone_ChIP-seq ENCSR608FDQ [biosample_summary="Homo sapiens spleen tissue male child (3 years)" and target="H3K27me3"]
|
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[1.76, 6.18] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 307730 | 0.01% | 769 |
| chr1 | 21585 | 0.01% | 61 |
| chr2 | 18837 | 0.01% | 43 |
| chr3 | 13337 | 0.01% | 33 |
| chr4 | 18046 | 0.01% | 41 |
| chr5 | 18091 | 0.01% | 47 |
| chr6 | 12887 | 0.01% | 34 |
| chr7 | 14791 | 0.01% | 39 |
| chr8 | 16820 | 0.01% | 41 |
| chr9 | 13101 | 0.01% | 35 |
| chr10 | 21657 | 0.02% | 52 |
| chr11 | 12621 | 0.01% | 31 |
| chr12 | 15213 | 0.01% | 42 |
| chr13 | 13723 | 0.01% | 35 |
| chr14 | 10095 | 0.01% | 25 |
| chr15 | 10470 | 0.01% | 27 |
| chr16 | 16352 | 0.02% | 41 |
| chr17 | 7023 | 0.01% | 19 |
| chr18 | 9598 | 0.01% | 19 |
| chr19 | 13132 | 0.02% | 36 |
| chr20 | 18853 | 0.03% | 44 |
| chr21 | 2547 | 0.01% | 4 |
| chr22 | 5437 | 0.01% | 13 |
| chrX | 3514 | <0.01% | 7 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 769 | 210 | 1741 | 400.17 | 351 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF718WPG.bed.gz | 14.84 KB | 0e84fae05e75a94757ef8dd3912523ba |
| ENCFF718WPG.tabix.bed.gz | 8.27 KB | ac712ac990c49698edd0d68fe9294b99 |
| ENCFF718WPG.tabix.bed.gz.tbi | 11.38 KB | 68c7cdd27363388654d6b890685ccaaf |
| genomic_resource.yaml | 1.96 KB | b4196583c3ab0e8e4cc57f92cc4918a4 |
| statistics/ |
