Resource

Id Histone_ChIP-seq/ENCSR604THFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR604THF [biosample_summary="Homo sapiens mesenchymal stem cell originated from H1" and target="H3K18ac"]
Description
Labels
  • accession: ENCSR604THF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000134/
  • biosample_summary: Homo sapiens mesenchymal stem cell originated from H1
  • date_created: 2015-10-01T07:16:34.223103+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR604THF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H3K18ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR604THF float

Histone_ChIP-seq_ENCSR604THF
Histone_ChIP-seq ENCSR604THF [biosample_summary="Homo sapiens mesenchymal stem cell originated from H1" and target="H3K18ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR604THF [1.76, 34.5]
n
47,742,138
mean
7.01
sd
3.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 477421381.48% 142689
chr1 4390768 1.76% 12752
chr2 4053160 1.67% 12564
chr3 2674529 1.35% 8641
chr4 1886499 0.99% 6362
chr5 2519769 1.39% 7910
chr6 2489951 1.46% 8227
chr7 2214539 1.39% 6953
chr8 2302636 1.59% 7341
chr9 2321099 1.68% 6655
chr10 2669671 2.00% 7960
chr11 2574005 1.91% 7116
chr12 2193362 1.65% 6502
chr13 1145764 1.00% 3898
chr14 1465963 1.37% 4306
chr15 1683811 1.65% 4979
chr16 1853322 2.05% 4810
chr17 2611883 3.14% 6737
chr18 950265 1.18% 3187
chr19 1770638 3.02% 4408
chr20 1343599 2.08% 3780
chr21 635832 1.36% 1782
chr22 1118529 2.20% 2920
chrX 849944 0.54% 2821
chrY 22600 0.04% 78
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 142689 115 6236 334.59 254
global segment-length histogram

Files

Filename Size md5
ENCFF978SQX.bed.gz 2.82 MB 0b276100b745e69e41e02f2c3b66017f
ENCFF978SQX.tabix.bed.gz 1.35 MB fae0aabec1b016f7b51619311031070d
ENCFF978SQX.tabix.bed.gz.tbi 356.36 KB 8ef22538f2683b205426aee8e6b59eec
genomic_resource.yaml 2.2 KB 595791edd09b75b35c19f22f21b10e49
statistics/