Resource

Id Histone_ChIP-seq/ENCSR604QMHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR604QMH [biosample_summary="Homo sapiens transverse colon tissue female adult (51 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR604QMH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001157/
  • biosample_summary: Homo sapiens transverse colon tissue female adult (51 years)
  • date_created: 2018-11-07T17:36:07.943163+00:00
  • date_released: 2018-12-14
  • doi: 10.17989/ENCSR604QMH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR604QMH float

Histone_ChIP-seq_ENCSR604QMH
Histone_ChIP-seq ENCSR604QMH [biosample_summary="Homo sapiens transverse colon tissue female adult (51 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR604QMH [1.25, 7.97]
n
22,195,720
mean
3.76
sd
1.28

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 221957200.69% 21678
chr1 1843675 0.74% 1744
chr1_KI270712v1_random 2402 1.36% 4
chr1_KI270713v1_random 274 0.67% 1
chr1_KI270714v1_random 301 0.72% 1
chr2 1288374 0.53% 982
chr3 698601 0.35% 572
chr4 741923 0.39% 570
chr5 1022026 0.56% 807
chr6 1231555 0.72% 1017
chr7 936150 0.59% 735
chr8 775944 0.53% 649
chr9 928906 0.67% 779
chr10 984397 0.74% 785
chr11 954098 0.71% 854
chr12 968248 0.73% 830
chr13 448274 0.39% 339
chr14 578203 0.54% 448
chr15 540667 0.53% 484
chr16 681899 0.75% 634
chr17 1215376 1.46% 1091
chr17_GL000205v2_random 22776 12.27% 19
chr18 288689 0.36% 252
chr19 1255806 2.14% 1129
chr20 865873 1.34% 853
chr21 223174 0.48% 207
chr22 478847 0.94% 499
chr22_KI270733v1_random 8514 4.74% 17
chrUn_GL000219v1 10020 5.59% 12
chrUn_GL000224v1 2608 1.45% 5
chrUn_KI270438v1 1179 1.05% 3
chrUn_KI270466v1 379 30.74% 1
chrUn_KI270467v1 1362 34.74% 2
chrUn_KI270744v1 1562 0.93% 2
chrX 3193638 2.05% 5351
3332 contigs with no values (185035611 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21678 205 29050 1023.88 615
global segment-length histogram

Files

Filename Size md5
ENCFF476WMV.bed.gz 441.26 KB fc387b6b4cd7e9320f4c7b949eee9650
ENCFF476WMV.tabix.bed.gz 222.47 KB 1f6cee4d7bff0d21ace242802990716e
ENCFF476WMV.tabix.bed.gz.tbi 88.68 KB e492e88bcd5083f52a4b623e2ce9f776
genomic_resource.yaml 2.0 KB 995071788c479f1cdd125bce781d894e
statistics/