Resource
| Id | Histone_ChIP-seq/ENCSR604JDV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR604JDV [biosample_summary="Homo sapiens cingulate gyrus tissue female adult (75 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN578RRY|/analyses/ENCAN578RRY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF028KKR|/files/ENCFF028KKR/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 18743636 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR604JDV | float |
Histone_ChIP-seq_ENCSR604JDV |
Histone_ChIP-seq ENCSR604JDV [biosample_summary="Homo sapiens cingulate gyrus tissue female adult (75 years)" and target="H3K27ac"]
|
 |
[2.01, 74.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 65927786 | 2.05% | 77207 |
| chr1 | 6898773 | 2.77% | 7831 |
| chr2 | 4678522 | 1.93% | 5643 |
| chr3 | 3824109 | 1.93% | 4563 |
| chr4 | 2377255 | 1.25% | 2977 |
| chr5 | 3287496 | 1.81% | 3848 |
| chr6 | 3323143 | 1.95% | 3901 |
| chr7 | 2788145 | 1.75% | 3540 |
| chr8 | 2508716 | 1.73% | 3039 |
| chr9 | 3287959 | 2.38% | 3716 |
| chr10 | 3481597 | 2.60% | 3899 |
| chr11 | 4187805 | 3.10% | 4640 |
| chr12 | 3174511 | 2.38% | 3783 |
| chr13 | 1422885 | 1.24% | 1745 |
| chr14 | 2338127 | 2.18% | 2593 |
| chr15 | 2232448 | 2.19% | 2683 |
| chr16 | 2411145 | 2.67% | 2831 |
| chr17 | 4006768 | 4.81% | 4464 |
| chr18 | 1247288 | 1.55% | 1541 |
| chr19 | 3017790 | 5.15% | 3504 |
| chr20 | 1959983 | 3.04% | 2286 |
| chr21 | 670580 | 1.44% | 803 |
| chr22 | 1814336 | 3.57% | 2048 |
| chrX | 986902 | 0.63% | 1328 |
| chrY | 1503 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 77207 | 205 | 15800 | 853.91 | 599 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF100WAF.bed.gz | 1.56 MB | ad82a0979f2d39516f5b0e8f64b511b5 |
| ENCFF100WAF.tabix.bed.gz | 773.73 KB | 31db1cdd9c8a964c09d400ddecd79f92 |
| ENCFF100WAF.tabix.bed.gz.tbi | 236.92 KB | 34fcbd4ad23e5acdfbeec0a35ec02741 |
| genomic_resource.yaml | 2.01 KB | e31ba91a4504610687c2236d026f4bc4 |
| statistics/ |