Histone_ChIP-seq_ENCSR604III
Histone_ChIP-seq ENCSR604III [biosample_summary="Homo sapiens Karpas-422" and target="H3K79me2"]
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| Id: | Histone_ChIP-seq/ENCSR604III |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR604III [biosamplesummary="Homo sapiens Karpas-422" and target="H3K79me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN952JJA|/analyses/ENCAN952JJA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN952JJA|/analyses/ENCAN952JJA/} has in progress subobject document {9f8f73bd-944a-45a6-b8b1-557a6ad1d0b5|/documents/9f8f73bd-944a-45a6-b8b1-557a6ad1d0b5/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF270OIQ|/files/ENCFF270OIQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF270OIQ|/files/ENCFF270OIQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.54. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR604III | float |
Histone_ChIP-seq_ENCSR604III |
Histone_ChIP-seq ENCSR604III [biosample_summary="Homo sapiens Karpas-422" and target="H3K79me2"]
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[1.42, 23.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF875KRI.bed.gz | 2.65 MB | a6238bec97f87633f5f1d0ed279f1084 |
| ENCFF875KRI.bed.gz.dvc | 101.0 B | 30bca62eefa073062b1cbb9f22e27bd8 |
| ENCFF875KRI.tabix.bed.gz | 1.14 MB | a785d3b5f899f1a5c375f329130bbf38 |
| ENCFF875KRI.tabix.bed.gz.dvc | 107.0 B | 7d7813307113b6d1dcf28362f07b158f |
| ENCFF875KRI.tabix.bed.gz.tbi | 117.8 KB | 5766b5a928b323139c078566bd2eac8b |
| ENCFF875KRI.tabix.bed.gz.tbi.dvc | 110.0 B | 43f4b2342dea5965e86f026b0aca3dcf |
| genomic_resource.yaml | 2.92 KB | eeaf892adcac585b0e4e9fac320f4aae |
| genomic_resource_original.yaml | 2.81 KB | f06f0b67abd8061d4eb33845d04dc618 |
| statistics/ |