Resource
| Id | Histone_ChIP-seq/ENCSR599EKW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR599EKW [biosample_summary="Homo sapiens placenta tissue female embryo (113 days)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (113 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN372ZEC|/analyses/ENCAN372ZEC/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN372ZEC|/analyses/ENCAN372ZEC/} has in progress subobject document {a6c47fd5-c0aa-480a-88bc-89e8ebb2c3b9|/documents/a6c47fd5-c0aa-480a-88bc-89e8ebb2c3b9/} audit_warning: Processed unfiltered alignments file {ENCFF863AHS|/files/ENCFF863AHS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 36072435 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR599EKW | float |
Histone_ChIP-seq_ENCSR599EKW |
Histone_ChIP-seq ENCSR599EKW [biosample_summary="Homo sapiens placenta tissue female embryo (113 days)" and target="H3K9me3"]
|
 |
[1.86, 19.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 45292562 | 1.41% | 98513 |
| chr1 | 1587627 | 0.64% | 3515 |
| chr2 | 3136635 | 1.30% | 7191 |
| chr3 | 2243577 | 1.13% | 5120 |
| chr4 | 3028146 | 1.59% | 6854 |
| chr5 | 2934406 | 1.62% | 6308 |
| chr6 | 1708140 | 1.00% | 3878 |
| chr7 | 3274662 | 2.06% | 6498 |
| chr8 | 3174692 | 2.19% | 6655 |
| chr9 | 1298527 | 0.94% | 2858 |
| chr10 | 1945535 | 1.45% | 4380 |
| chr11 | 1691397 | 1.25% | 3756 |
| chr12 | 2348591 | 1.76% | 4849 |
| chr13 | 2391053 | 2.09% | 5311 |
| chr14 | 1290327 | 1.21% | 3009 |
| chr15 | 1010904 | 0.99% | 2025 |
| chr16 | 1287525 | 1.43% | 2807 |
| chr17 | 802618 | 0.96% | 1696 |
| chr18 | 1700128 | 2.12% | 3665 |
| chr19 | 2058559 | 3.51% | 3967 |
| chr20 | 835992 | 1.30% | 1864 |
| chr21 | 1161486 | 2.49% | 2634 |
| chr22 | 860931 | 1.69% | 1694 |
| chrX | 3516996 | 2.25% | 7965 |
| chrY | 4108 | 0.01% | 14 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 98513 | 190 | 18986 | 459.76 | 359 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF990YJR.bed.gz | 1.71 MB | 024d6d1a625e4be42c5a27039dde7dad |
| ENCFF990YJR.tabix.bed.gz | 915.35 KB | ec52586d2eb238b36ad3d707ac3fc00a |
| ENCFF990YJR.tabix.bed.gz.tbi | 329.4 KB | 537233da45a7f86abb4cee5b229d599a |
| genomic_resource.yaml | 2.2 KB | 6dea733287534139242102d9b26e40a0 |
| statistics/ |