Resource

Id Histone_ChIP-seq/ENCSR598XDAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR598XDA [biosample_summary="Homo sapiens BLaER1 120 hours after the\ \ sample was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10\ \ ng/mL CSF1" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR598XDA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 120 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:43.975407+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR598XDA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 120 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR598XDA float

Histone_ChIP-seq_ENCSR598XDA
Histone_ChIP-seq ENCSR598XDA [biosample_summary="Homo sapiens BLaER1 120 hours after the\ \ sample was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10\ \ ng/mL CSF1" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR598XDA [1.42, 22.1]
n
155,341,763
mean
5.21
sd
2.72

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1553417634.83% 216529
chr1 10423566 4.19% 14576
chr1_KI270706v1_random 13202 7.54% 28
chr1_KI270707v1_random 4114 12.84% 9
chr1_KI270708v1_random 39503 30.94% 47
chr1_KI270709v1_random 23052 34.48% 28
chr1_KI270710v1_random 1972 4.91% 4
chr1_KI270712v1_random 4034 2.29% 2
chr1_KI270713v1_random 1462 3.59% 4
chr1_KI270714v1_random 2944 7.06% 3
chr2 11441097 4.72% 16677
chr2_KI270715v1_random 266 0.16% 1
chr2_KI270716v1_random 9989 6.49% 7
chr3 8836761 4.46% 13517
chr3_GL000221v1_random 5797 3.73% 15
chr4 8799554 4.63% 12983
chr4_GL000008v2_random 10571 5.04% 13
chr5 9487783 5.23% 13731
chr5_GL000208v1_random 2726 2.94% 9
chr6 7519240 4.40% 11416
chr7 9744240 6.12% 12907
chr8 9719388 6.70% 13088
chr9 5505774 3.98% 7966
chr9_KI270719v1_random 5782 3.27% 10
chr9_KI270720v1_random 759 1.94% 2
chr10 6997119 5.23% 9732
chr11 5991445 4.44% 8568
chr12 7074520 5.31% 9545
chr13 4728907 4.13% 7531
chr14 4345057 4.06% 6295
chr14_GL000009v2_random 10450 5.18% 22
chr14_GL000194v1_random 12875 6.72% 16
chr14_GL000225v1_random 111499 52.80% 138
chr14_KI270722v1_random 31592 16.28% 45
chr14_KI270723v1_random 5933 15.57% 8
chr14_KI270724v1_random 5773 14.59% 7
chr14_KI270725v1_random 5043 2.92% 5
chr15 3876652 3.80% 5601
chr15_KI270727v1_random 985 0.22% 3
chr16 4060674 4.49% 5148
chr16_KI270728v1_random 43738 2.34% 74
chr17 3152440 3.79% 3982
chr17_GL000205v2_random 3725 2.01% 8
chr17_KI270729v1_random 207930 74.04% 32
chr17_KI270730v1_random 32728 29.08% 17
chr18 3320259 4.13% 5037
chr19 9103236 15.53% 6808
chr20 2904167 4.51% 4032
chr21 2362433 5.06% 3131
chr22 1564070 3.08% 2076
chr22_KI270731v1_random 473 0.31% 1
chr22_KI270732v1_random 4319 10.40% 3
chr22_KI270733v1_random 20296 11.29% 37
chr22_KI270735v1_random 6137 14.34% 5
chr22_KI270736v1_random 137423 75.54% 38
chr22_KI270737v1_random 69996 67.41% 37
chr22_KI270738v1_random 58406 58.77% 15
chr22_KI270739v1_random 712 0.96% 1
chrUn_GL000195v1 1130 0.62% 2
chrUn_GL000213v1 3548 2.16% 6
chrUn_GL000214v1 11899 8.64% 24
chrUn_GL000216v2 113134 64.06% 53
chrUn_GL000218v1 3923 2.43% 8
chrUn_GL000219v1 11064 6.17% 15
chrUn_GL000220v1 8048 4.97% 16
chrUn_GL000224v1 102176 56.86% 74
chrUn_KI270303v1 250 12.87% 1
chrUn_KI270320v1 413 9.35% 1
chrUn_KI270322v1 1334 6.21% 3
chrUn_KI270330v1 800 48.43% 2
chrUn_KI270420v1 296 12.75% 1
chrUn_KI270435v1 12020 12.93% 29
chrUn_KI270438v1 68937 61.27% 30
chrUn_KI270442v1 131284 33.49% 70
chrUn_KI270448v1 949 11.87% 3
chrUn_KI270465v1 833 46.96% 2
chrUn_KI270468v1 929 22.91% 1
chrUn_KI270508v1 1380 70.73% 3
chrUn_KI270510v1 664 27.49% 1
chrUn_KI270512v1 6654 29.33% 11
chrUn_KI270515v1 275 4.32% 1
chrUn_KI270517v1 359 11.04% 1
chrUn_KI270518v1 727 33.26% 1
chrUn_KI270519v1 27510 19.92% 57
chrUn_KI270529v1 835 43.97% 1
chrUn_KI270538v1 1788 1.96% 4
chrUn_KI270548v1 301 18.82% 1
chrUn_KI270579v1 264 0.85% 1
chrUn_KI270580v1 885 56.99% 2
chrUn_KI270581v1 519 7.37% 2
chrUn_KI270582v1 1408 21.65% 3
chrUn_KI270583v1 460 32.86% 1
chrUn_KI270584v1 707 15.67% 2
chrUn_KI270588v1 303 4.92% 1
chrUn_KI270589v1 4424 9.95% 3
chrUn_KI270590v1 1139 24.31% 1
chrUn_KI270591v1 949 16.37% 1
chrUn_KI270741v1 6654 4.23% 12
chrUn_KI270742v1 4023 2.15% 9
chrUn_KI270743v1 6630 3.15% 12
chrUn_KI270744v1 23459 13.92% 34
chrUn_KI270745v1 335 0.80% 1
chrUn_KI270746v1 769 1.16% 2
chrUn_KI270747v1 5716 2.88% 8
chrUn_KI270748v1 488 0.52% 1
chrUn_KI270749v1 3918 2.47% 4
chrUn_KI270750v1 1876 1.26% 5
chrUn_KI270751v1 9480 6.29% 19
chrUn_KI270753v1 5702 9.06% 13
chrUn_KI270754v1 17118 42.59% 20
chrUn_KI270755v1 712 1.94% 2
chrUn_KI270756v1 75382 94.71% 24
chrUn_KI270757v1 7735 10.86% 11
chrX 12542113 8.04% 20459
chrY 250547 0.44% 413
3252 contigs with no values (118320736 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 216529 250 56985 717.42 440
global segment-length histogram

Files

Filename Size md5
ENCFF163UNF.bed.gz 4.09 MB 02f7618bfd67a9fa1b4e55af4cefec91
ENCFF163UNF.tabix.bed.gz 2.04 MB 9513fca2da91fce1efc12f9e3baa5b3c
ENCFF163UNF.tabix.bed.gz.tbi 542.38 KB b46f24ed6cdae8204928c58073ce02f1
genomic_resource.yaml 3.12 KB 95a103268dadf19e67e1bd6043af4623
statistics/