Resource

Id Histone_ChIP-seq/ENCSR598UDUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR598UDU [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H2AK5ac"]
Description
Labels
  • accession: ENCSR598UDU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_NTR_0000856/
  • biosample_summary: Homo sapiens mesendoderm originated from H1
  • date_created: 2015-10-01T07:13:52.213489+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR598UDU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H2AK5ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR598UDU float

Histone_ChIP-seq_ENCSR598UDU
Histone_ChIP-seq ENCSR598UDU [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H2AK5ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR598UDU [1.89, 8.11]
n
8,213,921
mean
3.55
sd
0.729

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 82139210.26% 32776
chr1 1013128 0.41% 3936
chr2 595699 0.25% 2469
chr3 506715 0.26% 2102
chr4 268195 0.14% 1127
chr5 469882 0.26% 1930
chr6 392886 0.23% 1627
chr7 324955 0.20% 1339
chr8 393100 0.27% 1605
chr9 301844 0.22% 1201
chr10 462004 0.35% 1812
chr11 491892 0.36% 1959
chr12 451190 0.34% 1783
chr13 160974 0.14% 699
chr14 285866 0.27% 1113
chr15 273449 0.27% 1040
chr16 278279 0.31% 1101
chr17 424807 0.51% 1611
chr18 243070 0.30% 979
chr19 242863 0.41% 921
chr20 261599 0.41% 1009
chr21 82039 0.18% 319
chr22 224863 0.44% 833
chrX 63184 0.04% 255
chrY 1438 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32776 130 1904 250.61 213
global segment-length histogram

Files

Filename Size md5
ENCFF019LHT.bed.gz 627.12 KB 94143e3d5bb02afdef43c6bbf1e38452
ENCFF019LHT.tabix.bed.gz 328.21 KB bc60cde796c2af77646b234f12791030
ENCFF019LHT.tabix.bed.gz.tbi 137.83 KB 2663a299e3f063c2b57472942333dc1f
genomic_resource.yaml 1.47 KB b8d20342c948d74c3354356fe4777e87
statistics/