Resource

Id Histone_ChIP-seq/ENCSR598CRAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR598CRA [biosample_summary="Homo sapiens BLaER1 3 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR598CRA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 3 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:18.336192+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR598CRA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 3 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR598CRA float

Histone_ChIP-seq_ENCSR598CRA
Histone_ChIP-seq ENCSR598CRA [biosample_summary="Homo sapiens BLaER1 3 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR598CRA [1.22, 25.8]
n
213,692,016
mean
7.96
sd
3.81

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2136920166.64% 158276
chr1 19797531 7.95% 14631
chr1_KI270706v1_random 503 0.29% 2
chr1_KI270712v1_random 1486 0.84% 2
chr1_KI270713v1_random 9767 23.97% 13
chr1_KI270714v1_random 1589 3.81% 4
chr2 16783560 6.93% 12685
chr3 11679385 5.89% 9198
chr3_GL000221v1_random 3319 2.14% 8
chr4 8125205 4.27% 6534
chr4_GL000008v2_random 1024 0.49% 2
chr5 10614314 5.85% 7980
chr6 10938063 6.40% 8377
chr7 10560412 6.63% 8169
chr8 9716084 6.69% 7184
chr9 9448640 6.83% 6853
chr9_KI270719v1_random 388 0.22% 1
chr10 11069918 8.27% 8079
chr11 10361487 7.67% 7360
chr11_KI270721v1_random 1249 1.25% 3
chr12 9663919 7.25% 7121
chr13 4960880 4.34% 4132
chr14 7190932 6.72% 5080
chr14_GL000009v2_random 1520 0.75% 3
chr14_GL000194v1_random 2304 1.20% 4
chr14_GL000225v1_random 1891 0.90% 2
chr14_KI270723v1_random 276 0.72% 1
chr14_KI270724v1_random 251 0.63% 1
chr14_KI270726v1_random 4618 10.56% 5
chr15 7064006 6.93% 5258
chr15_KI270727v1_random 4034 0.90% 7
chr16 9084017 10.06% 6343
chr16_KI270728v1_random 3867 0.21% 6
chr17 11951043 14.35% 7801
chr17_GL000205v2_random 16894 9.10% 15
chr17_KI270729v1_random 975 0.35% 2
chr18 4402193 5.48% 3483
chr19 8830852 15.07% 6068
chr20 7104142 11.02% 5170
chr21 3287025 7.04% 2335
chr22 6366442 12.53% 4170
chr22_KI270731v1_random 1278 0.85% 2
chr22_KI270733v1_random 6564 3.65% 10
chr22_KI270734v1_random 1688 1.02% 4
chrUn_GL000195v1 3979 2.18% 6
chrUn_GL000214v1 1836 1.33% 4
chrUn_GL000216v2 2352 1.33% 3
chrUn_GL000218v1 256 0.16% 1
chrUn_GL000219v1 11068 6.18% 9
chrUn_GL000220v1 1350 0.83% 4
chrUn_GL000224v1 794 0.44% 1
chrUn_KI270435v1 250 0.27% 1
chrUn_KI270438v1 264 0.23% 1
chrUn_KI270442v1 1396 0.36% 2
chrUn_KI270512v1 258 1.14% 1
chrUn_KI270519v1 3252 2.35% 5
chrUn_KI270584v1 426 9.44% 1
chrUn_KI270742v1 721 0.39% 2
chrUn_KI270744v1 5069 3.01% 5
chrUn_KI270751v1 948 0.63% 1
chrUn_KI270753v1 2656 4.22% 3
chrX 4584052 2.94% 4108
chrY 5554 0.01% 10
3304 contigs with no values (121481649 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 158276 250 50547 1350.12 828
global segment-length histogram

Files

Filename Size md5
ENCFF568OUC.bed.gz 3.8 MB 04c8a1750f78ed1ecf1738de4d47a680
ENCFF568OUC.tabix.bed.gz 1.66 MB 5c0cf42408ddbb0ed957f082ca312727
ENCFF568OUC.tabix.bed.gz.tbi 382.65 KB c6efb82bad876c214480a215ed393343
genomic_resource.yaml 3.11 KB 7de779d9dee39f586c3adb6147a1b0b0
statistics/