Histone_ChIP-seq_ENCSR596NOF
Histone_ChIP-seq ENCSR596NOF [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR596NOF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR596NOF [biosamplesummary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN565EVS|/analyses/ENCAN565EVS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF574OYF|/files/ENCFF574OYF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF574OYF|/files/ENCFF574OYF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.60. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR596NOF | float |
Histone_ChIP-seq_ENCSR596NOF |
Histone_ChIP-seq ENCSR596NOF [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K4me3"]
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[1.78, 31.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF116OPY.bed.gz | 774.39 KB | d78b02887ecd91109db458ab2570d6cd |
| ENCFF116OPY.bed.gz.dvc | 100.0 B | c1bdeb9e820a81f66fa48a4aa28ed9a3 |
| ENCFF116OPY.tabix.bed.gz | 348.38 KB | f5dd21aab7fb99a6167cc10f3e6ac8d4 |
| ENCFF116OPY.tabix.bed.gz.dvc | 106.0 B | 864bb1cbda6b36c54fd803fe140a109d |
| ENCFF116OPY.tabix.bed.gz.tbi | 162.05 KB | 3ea2ea7a6a83e8c8ce94c9c3a7d775fd |
| ENCFF116OPY.tabix.bed.gz.tbi.dvc | 110.0 B | 9ae6b5c5beeeb2662eeae5a51e2bec5d |
| genomic_resource.yaml | 2.77 KB | 653c3824b3253553059c17b84d4e5c8e |
| genomic_resource_original.yaml | 2.62 KB | c3cb090d0e58d10c254dc90bf8f8b7b5 |
| statistics/ |