type: position_score
table:
  filename: ENCFF735XMI.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR591KSN
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR591KSN [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3F3A"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR591KSN [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3F3A"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: female embryo (5 days)


    **output\_type**: pseudoreplicated peaks


    **audit\_internal\_action**: Released analysis {ENCAN048BVE|/analyses/ENCAN048BVE/}
    has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}


    **audit\_internal\_action**: Released analysis {ENCAN048BVE|/analyses/ENCAN048BVE/}
    has in progress subobject document {e0722e96-1da7-426f-88a3-033706a39aac|/documents/e0722e96-1da7-426f-88a3-033706a39aac/}


    **audit\_warning**: Processed alignments file {ENCFF534LVE|/files/ENCFF534LVE/}
    processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 41977407 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3F3A-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR591KSN
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female embryo (5 days)
    biosample_summary: Homo sapiens neural progenitor cell originated from H9
    replication_type: isogenic
    biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0011020/
    perturbed: false
    doi: 10.17989/ENCSR591KSN
    date_created: '2016-04-11T19:08:39.462985+00:00'
    date_released: '2016-11-14'
    submitter_comment: As of March 29th, 2017, GRCh38 assembly has been rerun for
      second replicate mapping and peak calling.
    target: H3F3A
