Histone_ChIP-seq_ENCSR590ZSL
Histone_ChIP-seq ENCSR590ZSL [biosample_summary="Homo sapiens SJSA1" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR590ZSL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR590ZSL [biosamplesummary="Homo sapiens SJSA1" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN208EBK|/analyses/ENCAN208EBK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF827HTH|/files/ENCFF827HTH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF827HTH|/files/ENCFF827HTH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.01. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF165XGW|/files/ENCFF165XGW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.93. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR590ZSL | float |
Histone_ChIP-seq_ENCSR590ZSL |
Histone_ChIP-seq ENCSR590ZSL [biosample_summary="Homo sapiens SJSA1" and target="H3K4me1"]
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[1.22, 21] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF762WAB.bed.gz | 3.25 MB | 30e0edeb3cf04c51be92f964ea103fdb |
| ENCFF762WAB.bed.gz.dvc | 101.0 B | 8122a700602dc61f2d6899e70946c284 |
| ENCFF762WAB.tabix.bed.gz | 1.33 MB | 9bc83ccf0e42d598f1b4e6491ce534e7 |
| ENCFF762WAB.tabix.bed.gz.dvc | 107.0 B | a09ebef368e55637cad76f746317296d |
| ENCFF762WAB.tabix.bed.gz.tbi | 332.05 KB | 37c61f4ee6b1e33957e7ee0d83c2e34d |
| ENCFF762WAB.tabix.bed.gz.tbi.dvc | 110.0 B | dbd36cfcfa9418f9e213c52aad2d6ca9 |
| genomic_resource.yaml | 3.32 KB | 33581febb96df0877a43dc7ce4a3aac2 |
| genomic_resource_original.yaml | 3.21 KB | d1f2b8d6c4b7b2945da922e7d67168d1 |
| statistics/ |