Histone_ChIP-seq_ENCSR589DBF
Histone_ChIP-seq ENCSR589DBF [biosample_summary="Homo sapiens spleen tissue female adult (51 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR589DBF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR589DBF [biosamplesummary="Homo sapiens spleen tissue female adult (51 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (51 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN721JXZ|/analyses/ENCAN721JXZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF107JVE|/files/ENCFF107JVE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF107JVE|/files/ENCFF107JVE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.68. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR589DBF | float |
Histone_ChIP-seq_ENCSR589DBF |
Histone_ChIP-seq ENCSR589DBF [biosample_summary="Homo sapiens spleen tissue female adult (51 years)" and target="H3K4me3"]
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[1.45, 97.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF774LJL.bed.gz | 800.35 KB | 8263c69b74649fd5170c274da644e406 |
| ENCFF774LJL.bed.gz.dvc | 100.0 B | 8ed989b01e8f03c8a1a981fd08d59da7 |
| ENCFF774LJL.tabix.bed.gz | 330.07 KB | 4f3fc2402198052dd41abddaf61c6e89 |
| ENCFF774LJL.tabix.bed.gz.dvc | 106.0 B | 43d623a64d4de9e4febfb4b61c39ece0 |
| ENCFF774LJL.tabix.bed.gz.tbi | 174.81 KB | be14868a9498fd2343b9aa67daceaead |
| ENCFF774LJL.tabix.bed.gz.tbi.dvc | 110.0 B | df56cc6d1fdfcbb414d3ebe4cc12f1ff |
| genomic_resource.yaml | 2.74 KB | a52fb1284eacb65ff35a6461bb61a270 |
| genomic_resource_original.yaml | 2.61 KB | 7d8c1b3a1e5b8891df0dbd70c8940506 |
| statistics/ |