Resource

Id Histone_ChIP-seq/ENCSR588PZNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR588PZN [biosample_summary="Homo sapiens body of pancreas tissue female adult (51 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR588PZN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001150/
  • biosample_summary: Homo sapiens body of pancreas tissue female adult (51 years)
  • date_created: 2019-01-28T12:32:59.462972+00:00
  • date_released: 2019-09-12
  • doi: 10.17989/ENCSR588PZN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR588PZN float

Histone_ChIP-seq_ENCSR588PZN
Histone_ChIP-seq ENCSR588PZN [biosample_summary="Homo sapiens body of pancreas tissue female adult (51 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR588PZN [1.45, 15.9]
n
14,844,203
mean
6.11
sd
1.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 148442030.46% 16280
chr1 1501866 0.60% 1640
chr2 1049209 0.43% 1128
chr3 867859 0.44% 913
chr4 609007 0.32% 633
chr5 709766 0.39% 730
chr6 870185 0.51% 947
chr7 747595 0.47% 837
chr8 559187 0.39% 589
chr9 610646 0.44% 678
chr10 651517 0.49% 693
chr11 813779 0.60% 883
chr12 775961 0.58% 840
chr13 303219 0.27% 320
chr14 504424 0.47% 561
chr15 500094 0.49% 529
chr16 600367 0.66% 691
chr17 833299 1.00% 932
chr18 245418 0.31% 271
chr19 945045 1.61% 1120
chr20 374919 0.58% 399
chr21 142854 0.31% 158
chr22 320345 0.63% 370
chrM 12733 76.85% 7
chrX 294300 0.19% 410
chrY 609 <0.01% 1
3341 contigs with no values (129060516 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 16280 205 7042 911.81 810
global segment-length histogram

Files

Filename Size md5
ENCFF908RAT.bed.gz 387.0 KB dc3e0759eed18802c5629234767a10d4
ENCFF908RAT.tabix.bed.gz 179.61 KB b8ed99b2eb73add6b55304e3d4c3bed4
ENCFF908RAT.tabix.bed.gz.tbi 107.89 KB 9339e5c67c3e4b420b2e4d467b2aa4ab
genomic_resource.yaml 1.52 KB fd631c05ba06b56b63a1ff611644e01b
statistics/