Histone_ChIP-seq_ENCSR587VHH
Histone_ChIP-seq ENCSR587VHH [biosample_summary="Homo sapiens brain microvascular endothelial cell" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR587VHH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR587VHH [biosamplesummary="Homo sapiens brain microvascular endothelial cell" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN568LFS|/analyses/ENCAN568LFS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF049TQC|/files/ENCFF049TQC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF049TQC|/files/ENCFF049TQC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.54. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF761ZYL|/files/ENCFF761ZYL/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF761ZYL|/files/ENCFF761ZYL/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.26. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR587VHH | float |
Histone_ChIP-seq_ENCSR587VHH |
Histone_ChIP-seq ENCSR587VHH [biosample_summary="Homo sapiens brain microvascular endothelial cell" and target="H3K36me3"]
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[1.67, 8.86] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF784BVN.bed.gz | 2.05 MB | 815eb537049ef81ee0a0c8282212ce09 |
| ENCFF784BVN.bed.gz.dvc | 101.0 B | bd5a07fac2ea03025b42ad0d5fa14d29 |
| ENCFF784BVN.tabix.bed.gz | 1.02 MB | b54e4524a845cc2723fbb7110fb1a815 |
| ENCFF784BVN.tabix.bed.gz.dvc | 107.0 B | e9a0bd9b849a7a79b45c3a3644a1970c |
| ENCFF784BVN.tabix.bed.gz.tbi | 143.55 KB | cf08008780e12e5c5328546cd3359884 |
| ENCFF784BVN.tabix.bed.gz.tbi.dvc | 110.0 B | f03f530d30a2a4fcff6efec8ec219d08 |
| genomic_resource.yaml | 4.09 KB | a12d0114910fabc03b5d8e2e393d7998 |
| genomic_resource_original.yaml | 3.95 KB | 17e282f9a4b4890e1da48e597196e89e |
| statistics/ |