Histone_ChIP-seq_ENCSR586POT
Histone_ChIP-seq ENCSR586POT [biosample_summary="Homo sapiens neutrophil male" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR586POT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR586POT [biosamplesummary="Homo sapiens neutrophil male" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN317GAA|/analyses/ENCAN317GAA/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF989POG|/files/ENCFF989POG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 26462620 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF989POG|/files/ENCFF989POG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF989POG|/files/ENCFF989POG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.05. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR586POT | float |
Histone_ChIP-seq_ENCSR586POT |
Histone_ChIP-seq ENCSR586POT [biosample_summary="Homo sapiens neutrophil male" and target="H3K4me1"]
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[1.87, 44] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF027ZFN.bed.gz | 1.97 MB | 6f709cfa4b3a9da2b8d125ca5283cb84 |
| ENCFF027ZFN.bed.gz.dvc | 101.0 B | e0fd4a32877ec47e703fce192514a286 |
| ENCFF027ZFN.tabix.bed.gz | 929.4 KB | a46b700ca4561823c83375c9aca5c89f |
| ENCFF027ZFN.tabix.bed.gz.dvc | 106.0 B | ffb55483e60f7d505c94a5a28d5b6739 |
| ENCFF027ZFN.tabix.bed.gz.tbi | 235.61 KB | d60a3e45487d4e546c6469dece32e3ba |
| ENCFF027ZFN.tabix.bed.gz.tbi.dvc | 110.0 B | 0ca3c303e4de13e4e1d6a5f231aaa7c3 |
| genomic_resource.yaml | 3.13 KB | 4601a16bfc8639ec15a27cc48f940219 |
| genomic_resource_original.yaml | 3.01 KB | a3e93ea5223ca372be5a5ded9479595a |
| statistics/ |