Histone_ChIP-seq_ENCSR585KLQ
Histone_ChIP-seq ENCSR585KLQ [biosample_summary="Homo sapiens liver tissue male adult (78 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR585KLQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR585KLQ [biosamplesummary="Homo sapiens liver tissue male adult (78 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (78 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN611YJV|/analyses/ENCAN611YJV/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF349CAM|/files/ENCFF349CAM/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 14743225 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF349CAM|/files/ENCFF349CAM/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF349CAM|/files/ENCFF349CAM/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.53. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR585KLQ | float |
Histone_ChIP-seq_ENCSR585KLQ |
Histone_ChIP-seq ENCSR585KLQ [biosample_summary="Homo sapiens liver tissue male adult (78 years)" and target="H3K36me3"]
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[2.01, 19] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF050ODT.bed.gz | 1.92 MB | b0821f4fa82bc4eceb16c0362bca825e |
| ENCFF050ODT.bed.gz.dvc | 101.0 B | 62a48c0b478c661b7836026c179bf5e7 |
| ENCFF050ODT.tabix.bed.gz | 995.77 KB | c206f871e3dd4f7b23dc848f57abc5e6 |
| ENCFF050ODT.tabix.bed.gz.dvc | 107.0 B | 100bc1f677be823561714dad46afda04 |
| ENCFF050ODT.tabix.bed.gz.tbi | 181.2 KB | 730a93bff3102ed3c7ad6a5309257cdb |
| ENCFF050ODT.tabix.bed.gz.tbi.dvc | 110.0 B | e924013e331a44952d5f8e46dd35af10 |
| genomic_resource.yaml | 3.27 KB | 86adb13b543e858a3487ce13f54c52b3 |
| genomic_resource_original.yaml | 3.14 KB | 5b860a9061abeaf32b4fd59843b9b9bf |
| statistics/ |