| Id: | Histone_ChIP-seq/ENCSR584RKY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR584RKY [biosamplesummary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN988GRL|/analyses/ENCAN988GRL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF316BSS|/files/ENCFF316BSS/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF316BSS|/files/ENCFF316BSS/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.05. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR584RKY | float |
Histone_ChIP-seq_ENCSR584RKY |
Histone_ChIP-seq ENCSR584RKY [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
|
 |
[1.85, 93.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF794FGI.bed.gz | 1012.71 KB | 8a8a63bc0d47ee2a57c3beac22435aeb |
| ENCFF794FGI.bed.gz.dvc | 101.0 B | 764254621cae95effb77403e45581320 |
| ENCFF794FGI.tabix.bed.gz | 437.96 KB | 576e87ab6fc0c060ff113102d624a20c |
| ENCFF794FGI.tabix.bed.gz.dvc | 106.0 B | eca6199cc3019abd8d5fc3c0eeb627e4 |
| ENCFF794FGI.tabix.bed.gz.tbi | 222.0 KB | 9c6bd7569481d60c0b3bfe402be7bbce |
| ENCFF794FGI.tabix.bed.gz.tbi.dvc | 110.0 B | f154e7cb69f8ebe932dbae1695953607 |
| genomic_resource.yaml | 3.04 KB | 0fe980b66340bd9102ace872a685e06e |
| genomic_resource_original.yaml | 2.85 KB | 9f71694c885b1eb3a898611b901981d1 |
| statistics/ |