Histone_ChIP-seq_ENCSR583ALI
Histone_ChIP-seq ENCSR583ALI [biosample_summary="Homo sapiens HUES6" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR583ALI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR583ALI [biosamplesummary="Homo sapiens HUES6" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN650SLY|/analyses/ENCAN650SLY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN650SLY|/analyses/ENCAN650SLY/} has in progress subobject document {72be0483-63fa-4afa-91be-5cccf0046532|/documents/72be0483-63fa-4afa-91be-5cccf0046532/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF432TWE|/files/ENCFF432TWE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF432TWE|/files/ENCFF432TWE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.17. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR583ALI | float |
Histone_ChIP-seq_ENCSR583ALI |
Histone_ChIP-seq ENCSR583ALI [biosample_summary="Homo sapiens HUES6" and target="H3K9ac"]
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[1.76, 118] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF254TKI.bed.gz | 1.32 MB | eed96f3fa0beca4a2e26e9700943a2d5 |
| ENCFF254TKI.bed.gz.dvc | 101.0 B | eccac7f45a889cae600247a3a972feb3 |
| ENCFF254TKI.tabix.bed.gz | 587.21 KB | 70ea7f5c8feb80d4aaac82eb67214595 |
| ENCFF254TKI.tabix.bed.gz.dvc | 106.0 B | c88de08f49c10b06a4a2345b1fef01da |
| ENCFF254TKI.tabix.bed.gz.tbi | 221.49 KB | a2720f996e9a8d5e991c0b5aa634c1ab |
| ENCFF254TKI.tabix.bed.gz.tbi.dvc | 110.0 B | ad9f670fc6fa68c82ccc81e18f22b3b0 |
| genomic_resource.yaml | 2.9 KB | af7951bad96da00501672bc12f335036 |
| genomic_resource_original.yaml | 2.79 KB | 82a6883d8fd12047c62fe35299165c53 |
| statistics/ |