Resource
| Id | Histone_ChIP-seq/ENCSR583ALI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR583ALI [biosample_summary="Homo sapiens HUES6" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN650SLY|/analyses/ENCAN650SLY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN650SLY|/analyses/ENCAN650SLY/} has in progress subobject document {72be0483-63fa-4afa-91be-5cccf0046532|/documents/72be0483-63fa-4afa-91be-5cccf0046532/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF432TWE|/files/ENCFF432TWE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF432TWE|/files/ENCFF432TWE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.17. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR583ALI | float |
Histone_ChIP-seq_ENCSR583ALI |
Histone_ChIP-seq ENCSR583ALI [biosample_summary="Homo sapiens HUES6" and target="H3K9ac"]
|
 |
[1.76, 118] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 40750403 | 1.27% | 53690 |
| chr1 | 3996085 | 1.61% | 5186 |
| chr2 | 2727194 | 1.13% | 3575 |
| chr3 | 2377388 | 1.20% | 3076 |
| chr4 | 1793233 | 0.94% | 2277 |
| chr5 | 2066526 | 1.14% | 2648 |
| chr6 | 2375299 | 1.39% | 2977 |
| chr7 | 2032539 | 1.28% | 2718 |
| chr8 | 1544757 | 1.06% | 2105 |
| chr9 | 1597407 | 1.15% | 2205 |
| chr10 | 1720678 | 1.29% | 2306 |
| chr11 | 2160882 | 1.60% | 2866 |
| chr12 | 2132207 | 1.60% | 2700 |
| chr13 | 894829 | 0.78% | 1180 |
| chr14 | 1247026 | 1.16% | 1636 |
| chr15 | 1240667 | 1.22% | 1646 |
| chr16 | 1577901 | 1.75% | 2113 |
| chr17 | 2175693 | 2.61% | 2860 |
| chr18 | 737258 | 0.92% | 958 |
| chr19 | 2158317 | 3.68% | 2975 |
| chr20 | 1094532 | 1.70% | 1452 |
| chr21 | 402576 | 0.86% | 523 |
| chr22 | 867669 | 1.71% | 1232 |
| chrX | 1829437 | 1.17% | 2475 |
| chrY | 303 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 53690 | 170 | 17915 | 758.99 | 533 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF254TKI.bed.gz | 1.32 MB | eed96f3fa0beca4a2e26e9700943a2d5 |
| ENCFF254TKI.tabix.bed.gz | 587.21 KB | 70ea7f5c8feb80d4aaac82eb67214595 |
| ENCFF254TKI.tabix.bed.gz.tbi | 221.49 KB | a2720f996e9a8d5e991c0b5aa634c1ab |
| genomic_resource.yaml | 2.9 KB | af7951bad96da00501672bc12f335036 |
| statistics/ |