Resource

Id Histone_ChIP-seq/ENCSR580GODcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR580GOD [biosample_summary="Homo sapiens BLaER1 36 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR580GOD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 36 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:13.705341+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR580GOD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 36 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR580GOD float

Histone_ChIP-seq_ENCSR580GOD
Histone_ChIP-seq ENCSR580GOD [biosample_summary="Homo sapiens BLaER1 36 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR580GOD [1.58, 26.9]
n
250,657,586
mean
7.68
sd
4.06

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2506575867.79% 217007
chr1 24023924 9.65% 20523
chr1_KI270706v1_random 264 0.15% 1
chr1_KI270710v1_random 262 0.65% 1
chr1_KI270711v1_random 315 0.75% 1
chr1_KI270712v1_random 250 0.14% 1
chr1_KI270713v1_random 6986 17.15% 9
chr1_KI270714v1_random 483 1.16% 1
chr2 19209528 7.93% 16971
chr3 13688456 6.90% 12841
chr3_GL000221v1_random 3518 2.26% 6
chr4 8927260 4.69% 8865
chr4_GL000008v2_random 727 0.35% 2
chr5 11999407 6.61% 10918
chr6 12113977 7.09% 11423
chr7 12394926 7.78% 11342
chr8 11749117 8.10% 9871
chr9 10976545 7.93% 9282
chr10 12873778 9.62% 11174
chr11 12503088 9.26% 10438
chr11_KI270721v1_random 2104 2.10% 5
chr12 11582735 8.69% 10102
chr13 5352081 4.68% 5344
chr14 8047505 7.52% 6761
chr14_GL000009v2_random 1400 0.69% 4
chr14_GL000194v1_random 2188 1.14% 4
chr14_GL000225v1_random 366 0.17% 1
chr14_KI270722v1_random 259 0.13% 1
chr14_KI270723v1_random 1239 3.25% 3
chr14_KI270724v1_random 397 1.00% 1
chr14_KI270726v1_random 1498 3.42% 3
chr15 8400287 8.24% 7266
chr15_KI270727v1_random 2160 0.48% 4
chr16 11400282 12.62% 8745
chr16_KI270728v1_random 1464 0.08% 3
chr17 14566754 17.50% 10972
chr17_GL000205v2_random 13650 7.35% 11
chr18 4887256 6.08% 4555
chr19 11038182 18.83% 8514
chr20 8881856 13.78% 7147
chr21 3620271 7.75% 2972
chr22 7727483 15.21% 5609
chr22_KI270731v1_random 1693 1.12% 4
chr22_KI270733v1_random 2991 1.66% 6
chr22_KI270734v1_random 1562 0.95% 3
chrUn_GL000195v1 1869 1.02% 5
chrUn_GL000214v1 932 0.68% 2
chrUn_GL000216v2 1439 0.81% 1
chrUn_GL000219v1 7319 4.08% 12
chrUn_GL000220v1 419 0.26% 1
chrUn_GL000224v1 1618 0.90% 1
chrUn_KI270438v1 408 0.36% 1
chrUn_KI270442v1 1306 0.33% 2
chrUn_KI270512v1 274 1.21% 1
chrUn_KI270519v1 1522 1.10% 3
chrUn_KI270742v1 373 0.20% 1
chrUn_KI270744v1 7637 4.53% 10
chrUn_KI270751v1 1253 0.83% 2
chrUn_KI270753v1 2718 4.32% 2
chrX 4614434 2.96% 5247
chrY 3591 0.01% 6
3306 contigs with no values (121921540 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 217007 250 51088 1155.07 682
global segment-length histogram

Files

Filename Size md5
ENCFF719BRB.bed.gz 4.58 MB 77ea6b0ddd232ec5f63252f89b32793c
ENCFF719BRB.tabix.bed.gz 2.15 MB ea3424fd09fecbe73a56222e2105bb4d
ENCFF719BRB.tabix.bed.gz.tbi 415.31 KB fe6be71206b207ee18b3dbc84cf133d1
genomic_resource.yaml 3.12 KB 4cb8dd1c4529303b9d91e356a1ef4f61
statistics/