Resource
| Id | Histone_ChIP-seq/ENCSR577DVK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR577DVK [biosample_summary="Homo sapiens colonic mucosa tissue female adult (73 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN394FMT|/analyses/ENCAN394FMT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF399CMU|/files/ENCFF399CMU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11243595 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR577DVK | float |
Histone_ChIP-seq_ENCSR577DVK |
Histone_ChIP-seq ENCSR577DVK [biosample_summary="Homo sapiens colonic mucosa tissue female adult (73 years)" and target="H3K4me3"]
|
 |
[2, 81.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 40084830 | 1.25% | 42873 |
| chr1 | 3987483 | 1.60% | 4200 |
| chr1_KI270709v1_random | 593 | 0.89% | 1 |
| chr1_KI270712v1_random | 340 | 0.19% | 1 |
| chr1_KI270713v1_random | 174 | 0.43% | 1 |
| chr1_KI270714v1_random | 203 | 0.49% | 1 |
| chr2 | 2677884 | 1.11% | 2831 |
| chr3 | 2115675 | 1.07% | 2138 |
| chr4 | 1481566 | 0.78% | 1507 |
| chr4_GL000008v2_random | 498 | 0.24% | 2 |
| chr5 | 1803454 | 0.99% | 1870 |
| chr6 | 2163490 | 1.27% | 2210 |
| chr7 | 1935862 | 1.21% | 2070 |
| chr8 | 1420009 | 0.98% | 1490 |
| chr9 | 1705079 | 1.23% | 1811 |
| chr9_KI270718v1_random | 276 | 0.73% | 1 |
| chr10 | 1653627 | 1.24% | 1757 |
| chr11 | 2257189 | 1.67% | 2295 |
| chr12 | 2041747 | 1.53% | 2131 |
| chr13 | 761673 | 0.67% | 798 |
| chr14 | 1330456 | 1.24% | 1400 |
| chr14_GL000194v1_random | 430 | 0.22% | 1 |
| chr14_GL000225v1_random | 1998 | 0.95% | 6 |
| chr15 | 1314023 | 1.29% | 1433 |
| chr16 | 1747655 | 1.93% | 1963 |
| chr16_KI270728v1_random | 160 | 0.01% | 1 |
| chr17 | 2569929 | 3.09% | 2760 |
| chr17_GL000205v2_random | 2688 | 1.45% | 3 |
| chr17_KI270729v1_random | 736 | 0.26% | 2 |
| chr17_KI270730v1_random | 250 | 0.22% | 1 |
| chr18 | 630828 | 0.78% | 738 |
| chr19 | 2889060 | 4.93% | 3385 |
| chr20 | 1092839 | 1.70% | 1219 |
| chr21 | 388287 | 0.83% | 467 |
| chr22 | 1005704 | 1.98% | 1136 |
| chr22_KI270733v1_random | 729 | 0.41% | 3 |
| chr22_KI270736v1_random | 2969 | 1.63% | 8 |
| chrUn_GL000195v1 | 577 | 0.32% | 1 |
| chrUn_GL000216v2 | 185 | 0.10% | 1 |
| chrUn_GL000219v1 | 4376 | 2.44% | 5 |
| chrUn_GL000224v1 | 238 | 0.13% | 1 |
| chrUn_KI270438v1 | 197 | 0.18% | 1 |
| chrUn_KI270442v1 | 1515 | 0.39% | 4 |
| chrUn_KI270757v1 | 170 | 0.24% | 1 |
| chrX | 1092009 | 0.70% | 1218 |
| 3322 contigs with no values (181221086 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 42873 | 155 | 8289 | 934.97 | 609 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF637OKI.bed.gz | 1.0 MB | 91ef2a421aa5462f681faf20df00d06e |
| ENCFF637OKI.tabix.bed.gz | 461.36 KB | dfe4b7217385aa1b517b60e2618c7e3b |
| ENCFF637OKI.tabix.bed.gz.tbi | 190.37 KB | a4d090d8c1390f7b58d147034f610f8f |
| genomic_resource.yaml | 2.0 KB | 68ba66583f226967b2c0eaba8531d09a |
| statistics/ |