Histone_ChIP-seq_ENCSR575ZNE
Histone_ChIP-seq ENCSR575ZNE [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K79me2"]
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| Id: | Histone_ChIP-seq/ENCSR575ZNE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR575ZNE [biosamplesummary="Homo sapiens mesendoderm originated from H1" and target="H3K79me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN070KHY|/analyses/ENCAN070KHY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN070KHY|/analyses/ENCAN070KHY/} has in progress subobject document {d00ffa06-ee9f-4591-bf73-a0c0840b8947|/documents/d00ffa06-ee9f-4591-bf73-a0c0840b8947/} audit_not_compliant: Processed alignments file {ENCFF695JGO|/files/ENCFF695JGO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 32699375 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF806ONR|/files/ENCFF806ONR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF806ONR|/files/ENCFF806ONR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.33. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR575ZNE | float |
Histone_ChIP-seq_ENCSR575ZNE |
Histone_ChIP-seq ENCSR575ZNE [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K79me2"]
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[1.81, 24.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF737FYR.bed.gz | 1.91 MB | 1b0067b4a8ee7e95a83ba6d0c167f9ce |
| ENCFF737FYR.bed.gz.dvc | 101.0 B | 0ddaad249326399de3944a13e33806c4 |
| ENCFF737FYR.tabix.bed.gz | 950.41 KB | 1dfbe4028891b84fcebc58a5ee4d588d |
| ENCFF737FYR.tabix.bed.gz.dvc | 106.0 B | ad1fd9104ebeea24b37ec38cfcab8596 |
| ENCFF737FYR.tabix.bed.gz.tbi | 118.74 KB | e012e91e4e92f59599f04f4491a469af |
| ENCFF737FYR.tabix.bed.gz.tbi.dvc | 110.0 B | 4b707d4a0622f4944f217ed07aee657f |
| genomic_resource.yaml | 3.45 KB | 4d84f7770894551bfd5a7acd5eb4bd69 |
| genomic_resource_original.yaml | 3.32 KB | 76f22214e6df4a694d961574c71551fe |
| statistics/ |