Resource
| Id | Histone_ChIP-seq/ENCSR575RRX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR575RRX [biosample_summary="Homo sapiens HepG2" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN097ZUN|/analyses/ENCAN097ZUN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF447EJD|/files/ENCFF447EJD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14021919 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF833HZR|/files/ENCFF833HZR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19705436 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR575RRX | float |
Histone_ChIP-seq_ENCSR575RRX |
Histone_ChIP-seq ENCSR575RRX [biosample_summary="Homo sapiens HepG2" and target="H3K4me3"]
|
 |
[1.88, 29.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 43129215 | 1.34% | 36190 |
| chr1 | 4252465 | 1.71% | 3498 |
| chr2 | 3456659 | 1.43% | 2808 |
| chr3 | 2443782 | 1.23% | 1999 |
| chr4 | 1704241 | 0.90% | 1355 |
| chr5 | 2041181 | 1.12% | 1653 |
| chr6 | 2734033 | 1.60% | 2153 |
| chr7 | 1981777 | 1.24% | 1721 |
| chr8 | 1586986 | 1.09% | 1304 |
| chr9 | 1758491 | 1.27% | 1485 |
| chr10 | 1885696 | 1.41% | 1575 |
| chr11 | 2118228 | 1.57% | 1755 |
| chr12 | 2187147 | 1.64% | 1785 |
| chr13 | 892708 | 0.78% | 777 |
| chr14 | 1585435 | 1.48% | 1343 |
| chr15 | 1337944 | 1.31% | 1146 |
| chr16 | 1865087 | 2.06% | 1643 |
| chr17 | 2511206 | 3.02% | 2094 |
| chr18 | 774674 | 0.96% | 656 |
| chr19 | 2232846 | 3.81% | 2077 |
| chr20 | 1275862 | 1.98% | 1045 |
| chr21 | 464961 | 1.00% | 442 |
| chr22 | 923234 | 1.82% | 854 |
| chrX | 1070667 | 0.69% | 983 |
| chrY | 43905 | 0.08% | 39 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 36190 | 200 | 11485 | 1191.74 | 838 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF632WJV.bed.gz | 938.8 KB | d462d90b06182347dd5784f2892c56ae |
| ENCFF632WJV.tabix.bed.gz | 406.34 KB | 503ffae3c049d44ef172abb55489e1c1 |
| ENCFF632WJV.tabix.bed.gz.tbi | 174.83 KB | f2b0b40c3e26fd099d59ae44687713e9 |
| genomic_resource.yaml | 2.35 KB | 49108af970ae7e77f12c2f9d7536f9ca |
| statistics/ |