Histone_ChIP-seq_ENCSR575ICR
Histone_ChIP-seq ENCSR575ICR [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR575ICR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR575ICR [biosamplesummary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (20 weeks) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN504BLY|/analyses/ENCAN504BLY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF859CZR|/files/ENCFF859CZR/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF859CZR|/files/ENCFF859CZR/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.95. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR575ICR | float |
Histone_ChIP-seq_ENCSR575ICR |
Histone_ChIP-seq ENCSR575ICR [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K4me3"]
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[1.98, 99.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF765ESV.bed.gz | 759.29 KB | dd8c2ca1a50d3cd4ab3e3e1c7385b287 |
| ENCFF765ESV.bed.gz.dvc | 100.0 B | 2e7f34b9c7a5fa957a8e7a58023b9349 |
| ENCFF765ESV.tabix.bed.gz | 355.73 KB | 5354ba9d0e7346785beb8a1da8ee093e |
| ENCFF765ESV.tabix.bed.gz.dvc | 106.0 B | ca81f1fc61f0022a4939073155edd44d |
| ENCFF765ESV.tabix.bed.gz.tbi | 183.77 KB | af1260cf04bcc3857e586cf3de25d11d |
| ENCFF765ESV.tabix.bed.gz.tbi.dvc | 110.0 B | b21bb4f60bcc5b2b694bffcfea6a0f27 |
| genomic_resource.yaml | 2.8 KB | 0482e3a4c1e4cd801fed3ec17f0c0e81 |
| genomic_resource_original.yaml | 2.65 KB | 5ebfd56b4b7a94a70b73a1e1ae20478d |
| statistics/ |