Resource

Id Histone_ChIP-seq/ENCSR574USPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR574USP [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR574USP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000317/
  • biosample_summary: Homo sapiens colonic mucosa tissue female adult (41 years)
  • date_created: 2021-04-30T04:18:07.993419+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR574USP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR574USP float

Histone_ChIP-seq_ENCSR574USP
Histone_ChIP-seq ENCSR574USP [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR574USP [1.45, 52]
n
36,702,452
mean
18.7
sd
9.15

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 367024521.14% 23052
chr1 3707831 1.49% 2311
chr2 2497800 1.03% 1536
chr3 2027217 1.02% 1240
chr4 1435453 0.75% 848
chr5 1703766 0.94% 991
chr6 2091950 1.22% 1245
chr7 1848081 1.16% 1187
chr8 1304497 0.90% 812
chr9 1521736 1.10% 980
chr10 1524155 1.14% 967
chr11 2052753 1.52% 1236
chr12 1895882 1.42% 1140
chr13 718195 0.63% 446
chr14 1191825 1.11% 738
chr15 1210904 1.19% 760
chr16 1511575 1.67% 994
chr17 2261634 2.72% 1407
chr18 584459 0.73% 399
chr19 2442643 4.17% 1679
chr20 950891 1.48% 609
chr21 354909 0.76% 235
chr22 831473 1.64% 556
chrX 1032823 0.66% 736
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 23052 240 10585 1592.16 1425
global segment-length histogram

Files

Filename Size md5
ENCFF100ICD.bed.gz 611.64 KB 901884c1f7de0dac64e995f2d44d0aac
ENCFF100ICD.tabix.bed.gz 267.16 KB 3bc0c8b119138b090b9c065eef290fc9
ENCFF100ICD.tabix.bed.gz.tbi 146.84 KB e1d22fc5de8eb463d81607af4a709d47
genomic_resource.yaml 1.52 KB 8d3277dd9985671a0448a3d55b1d9cc4
statistics/