Resource
| Id | Histone_ChIP-seq/ENCSR574KCT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR574KCT [biosample_summary="Homo sapiens placenta tissue male embryo (16 weeks)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (16 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN454ITU|/analyses/ENCAN454ITU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF178SBE|/files/ENCFF178SBE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 22303076 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR574KCT | float |
Histone_ChIP-seq_ENCSR574KCT |
Histone_ChIP-seq ENCSR574KCT [biosample_summary="Homo sapiens placenta tissue male embryo (16 weeks)" and target="H3K36me3"]
|
 |
[1.53, 61.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 83540850 | 2.60% | 106414 |
| chr1 | 8100555 | 3.25% | 10457 |
| chr2 | 5520866 | 2.28% | 8129 |
| chr3 | 4604594 | 2.32% | 6416 |
| chr4 | 2529097 | 1.33% | 3854 |
| chr5 | 3522514 | 1.94% | 5191 |
| chr6 | 3159880 | 1.85% | 4598 |
| chr7 | 3862291 | 2.42% | 5024 |
| chr8 | 2415976 | 1.66% | 3532 |
| chr9 | 3849366 | 2.78% | 4637 |
| chr10 | 3371400 | 2.52% | 4786 |
| chr11 | 4491805 | 3.33% | 5260 |
| chr12 | 4695208 | 3.52% | 5778 |
| chr13 | 1312689 | 1.15% | 2192 |
| chr14 | 2837647 | 2.65% | 3949 |
| chr15 | 2961342 | 2.90% | 4154 |
| chr16 | 4763384 | 5.27% | 5020 |
| chr17 | 5838710 | 7.01% | 6409 |
| chr18 | 979218 | 1.22% | 1575 |
| chr19 | 6775560 | 11.56% | 6326 |
| chr20 | 2850361 | 4.42% | 3281 |
| chr21 | 1139959 | 2.44% | 1356 |
| chr22 | 2882794 | 5.67% | 2758 |
| chrX | 1073686 | 0.69% | 1727 |
| chrY | 1948 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 106414 | 170 | 20254 | 785.06 | 531 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF010WDE.bed.gz | 2.07 MB | 70e786629e30b4ae0d63102294e35ef8 |
| ENCFF010WDE.tabix.bed.gz | 1.02 MB | 574b114c6ee2e7eabf0b3c235a2be463 |
| ENCFF010WDE.tabix.bed.gz.tbi | 171.86 KB | 272bda5847591844900e6137b88921d3 |
| genomic_resource.yaml | 1.99 KB | 2d9ed05fa48531eb37868b8e2efe89cd |
| statistics/ |