Resource

Id Histone_ChIP-seq/ENCSR573CWZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR573CWZ [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR573CWZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0011020/
  • biosample_summary: Homo sapiens neural progenitor cell originated from H9
  • date_created: 2016-04-11T19:06:12.139889+00:00
  • date_released: 2016-11-14
  • doi: 10.17989/ENCSR573CWZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR573CWZ float

Histone_ChIP-seq_ENCSR573CWZ
Histone_ChIP-seq ENCSR573CWZ [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR573CWZ [1.15, 6.34]
n
31,450,056
mean
2.84
sd
0.58

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 314500560.98% 49082
chr1 3076757 1.24% 4717
chr2 2885954 1.19% 4580
chr3 1970374 0.99% 3211
chr4 1894135 1.00% 2965
chr5 2014215 1.11% 3180
chr6 1693199 0.99% 2669
chr7 1475968 0.93% 2352
chr8 1266300 0.87% 2039
chr9 1159470 0.84% 1834
chr10 1313370 0.98% 2097
chr11 1416234 1.05% 2194
chr12 1807965 1.36% 2822
chr13 879117 0.77% 1420
chr14 1191069 1.11% 1871
chr15 1102718 1.08% 1798
chr16 726494 0.80% 1116
chr17 1175449 1.41% 1890
chr18 868764 1.08% 1331
chr19 1651373 2.82% 1785
chr20 527673 0.82% 851
chr21 365071 0.78% 587
chr22 273481 0.54% 450
chrX 709007 0.45% 1309
chrY 5899 0.01% 14
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49082 170 12824 640.77 517
global segment-length histogram

Files

Filename Size md5
ENCFF793AVR.bed.gz 1.03 MB fafb91cf54555a895ffc206ab4720a68
ENCFF793AVR.tabix.bed.gz 509.71 KB adc76505e416148decc56dea2731a59c
ENCFF793AVR.tabix.bed.gz.tbi 155.29 KB 149f789bfd1a4a7ee1c5fc8e22183450
genomic_resource.yaml 1.52 KB e43c0930aa7f0f3bc0ff0d68f13c52d9
statistics/