Resource
| Id | Histone_ChIP-seq/ENCSR571CSC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR571CSC [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN841MGM|/analyses/ENCAN841MGM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted unfiltered alignments file {ENCFF421PMX|/files/ENCFF421PMX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 36536596 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR571CSC | float |
Histone_ChIP-seq_ENCSR571CSC |
Histone_ChIP-seq ENCSR571CSC [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K9me3"]
|
 |
[1.28, 37.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 38666489 | 1.20% | 93726 |
| chr1 | 1956684 | 0.79% | 5205 |
| chr1_KI270706v1_random | 3510 | 2.01% | 12 |
| chr1_KI270707v1_random | 889 | 2.78% | 3 |
| chr1_KI270708v1_random | 428 | 0.34% | 2 |
| chr1_KI270709v1_random | 7343 | 10.98% | 12 |
| chr1_KI270712v1_random | 3475 | 1.97% | 2 |
| chr2 | 2058769 | 0.85% | 5563 |
| chr2_KI270716v1_random | 3060 | 1.99% | 7 |
| chr3 | 1156567 | 0.58% | 3368 |
| chr3_GL000221v1_random | 245 | 0.16% | 1 |
| chr4 | 1603901 | 0.84% | 4162 |
| chr4_GL000008v2_random | 6127 | 2.92% | 6 |
| chr5 | 2393076 | 1.32% | 5655 |
| chr5_GL000208v1_random | 2730 | 2.95% | 7 |
| chr6 | 1279595 | 0.75% | 3458 |
| chr7 | 3342548 | 2.10% | 7476 |
| chr8 | 2161989 | 1.49% | 4522 |
| chr9 | 1257956 | 0.91% | 3339 |
| chr9_KI270718v1_random | 373 | 0.98% | 1 |
| chr9_KI270719v1_random | 7228 | 4.09% | 17 |
| chr9_KI270720v1_random | 4406 | 11.28% | 5 |
| chr10 | 2422003 | 1.81% | 5686 |
| chr11 | 1241608 | 0.92% | 3447 |
| chr12 | 1542898 | 1.16% | 3747 |
| chr13 | 910528 | 0.80% | 2402 |
| chr14 | 1084459 | 1.01% | 2739 |
| chr14_GL000009v2_random | 5946 | 2.95% | 25 |
| chr14_GL000194v1_random | 14250 | 7.44% | 28 |
| chr14_GL000225v1_random | 89498 | 42.38% | 101 |
| chr14_KI270722v1_random | 15025 | 7.74% | 24 |
| chr14_KI270723v1_random | 11275 | 29.58% | 18 |
| chr14_KI270724v1_random | 6069 | 15.34% | 15 |
| chr14_KI270725v1_random | 3820 | 2.21% | 12 |
| chr15 | 919462 | 0.90% | 2192 |
| chr15_KI270727v1_random | 339 | 0.08% | 2 |
| chr16 | 1567501 | 1.74% | 4201 |
| chr16_KI270728v1_random | 9522 | 0.51% | 27 |
| chr17 | 923922 | 1.11% | 2453 |
| chr17_GL000205v2_random | 12029 | 6.48% | 25 |
| chr17_KI270729v1_random | 49511 | 17.63% | 84 |
| chr17_KI270730v1_random | 23383 | 20.78% | 17 |
| chr18 | 942088 | 1.17% | 2430 |
| chr19 | 4912927 | 8.38% | 10534 |
| chr20 | 1203865 | 1.87% | 3023 |
| chr21 | 1077875 | 2.31% | 2475 |
| chr22 | 1006334 | 1.98% | 2256 |
| chr22_KI270732v1_random | 6652 | 16.01% | 12 |
| chr22_KI270733v1_random | 9207 | 5.12% | 24 |
| chr22_KI270735v1_random | 8242 | 19.25% | 14 |
| chr22_KI270736v1_random | 136884 | 75.24% | 57 |
| chr22_KI270737v1_random | 150 | 0.14% | 1 |
| chr22_KI270738v1_random | 8464 | 8.52% | 25 |
| chrUn_GL000214v1 | 4924 | 3.58% | 12 |
| chrUn_GL000216v2 | 53943 | 30.54% | 102 |
| chrUn_GL000218v1 | 3978 | 2.47% | 16 |
| chrUn_GL000219v1 | 18757 | 10.47% | 41 |
| chrUn_GL000220v1 | 960 | 0.59% | 4 |
| chrUn_GL000224v1 | 24463 | 13.61% | 35 |
| chrUn_KI270320v1 | 416 | 9.42% | 1 |
| chrUn_KI270322v1 | 173 | 0.81% | 1 |
| chrUn_KI270330v1 | 232 | 14.04% | 1 |
| chrUn_KI270435v1 | 2609 | 2.81% | 4 |
| chrUn_KI270438v1 | 43765 | 38.90% | 44 |
| chrUn_KI270442v1 | 119321 | 30.43% | 108 |
| chrUn_KI270448v1 | 508 | 6.36% | 2 |
| chrUn_KI270465v1 | 245 | 13.81% | 1 |
| chrUn_KI270507v1 | 359 | 6.71% | 1 |
| chrUn_KI270508v1 | 419 | 21.48% | 2 |
| chrUn_KI270511v1 | 197 | 2.42% | 1 |
| chrUn_KI270512v1 | 1853 | 8.17% | 4 |
| chrUn_KI270515v1 | 154 | 2.42% | 1 |
| chrUn_KI270517v1 | 317 | 9.74% | 1 |
| chrUn_KI270518v1 | 163 | 7.46% | 1 |
| chrUn_KI270519v1 | 6232 | 4.51% | 13 |
| chrUn_KI270538v1 | 4079 | 4.47% | 12 |
| chrUn_KI270583v1 | 246 | 17.57% | 1 |
| chrUn_KI270584v1 | 420 | 9.31% | 1 |
| chrUn_KI270589v1 | 2989 | 6.72% | 1 |
| chrUn_KI270590v1 | 815 | 17.40% | 2 |
| chrUn_KI270591v1 | 1877 | 32.38% | 2 |
| chrUn_KI270742v1 | 5146 | 2.76% | 15 |
| chrUn_KI270743v1 | 4493 | 2.13% | 13 |
| chrUn_KI270744v1 | 9658 | 5.73% | 23 |
| chrUn_KI270746v1 | 2242 | 3.37% | 8 |
| chrUn_KI270749v1 | 3376 | 2.13% | 11 |
| chrUn_KI270750v1 | 4251 | 2.86% | 14 |
| chrUn_KI270751v1 | 6864 | 4.55% | 16 |
| chrUn_KI270753v1 | 1005 | 1.60% | 3 |
| chrUn_KI270754v1 | 2637 | 6.56% | 7 |
| chrUn_KI270755v1 | 521 | 1.42% | 2 |
| chrUn_KI270756v1 | 7313 | 9.19% | 11 |
| chrUn_KI270757v1 | 4835 | 6.79% | 9 |
| chrX | 526060 | 0.34% | 1458 |
| chrY | 377039 | 0.66% | 802 |
| 3272 contigs with no values (119683089 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 93726 | 150 | 55982 | 412.55 | 293 |
×
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF541AMF.bed.gz | 1.55 MB | 2288f1bc811cf3ac5184ee91585b0cc2 |
| ENCFF541AMF.tabix.bed.gz | 845.19 KB | 2f6cdccaa3568197662dae9dbc851cf8 |
| ENCFF541AMF.tabix.bed.gz.tbi | 301.14 KB | 880b21ca76bc829ddb829c9adbd238ad |
| genomic_resource.yaml | 1.95 KB | 6b8c2fd16c9d46506c1fdbe7ee22a71b |
| statistics/ |