Resource
| Id | Histone_ChIP-seq/ENCSR568EZU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR568EZU [biosample_summary="Homo sapiens substantia nigra tissue male adult (81 years)" and target="H3K9me3"] |
| Description |
status: archived biological_replicates: Rep 1 summary: male adult (81 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN105TZJ|/analyses/ENCAN105TZJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted unfiltered alignments file {ENCFF378SWA|/files/ENCFF378SWA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 30016255 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR568EZU | float |
Histone_ChIP-seq_ENCSR568EZU |
Histone_ChIP-seq ENCSR568EZU [biosample_summary="Homo sapiens substantia nigra tissue male adult (81 years)" and target="H3K9me3"]
|
 |
[1.89, 13.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11528492 | 0.36% | 22010 |
| chr1 | 719787 | 0.29% | 1416 |
| chr1_KI270709v1_random | 1753 | 2.62% | 3 |
| chr2 | 825837 | 0.34% | 1663 |
| chr2_KI270716v1_random | 331 | 0.22% | 1 |
| chr3 | 588913 | 0.30% | 1235 |
| chr4 | 692667 | 0.36% | 1399 |
| chr4_GL000008v2_random | 4340 | 2.07% | 1 |
| chr5 | 815645 | 0.45% | 1614 |
| chr6 | 565536 | 0.33% | 1193 |
| chr7 | 665973 | 0.42% | 1341 |
| chr8 | 587630 | 0.40% | 1158 |
| chr9 | 440586 | 0.32% | 823 |
| chr9_KI270720v1_random | 250 | 0.64% | 1 |
| chr10 | 606948 | 0.45% | 1199 |
| chr11 | 502636 | 0.37% | 1037 |
| chr12 | 619668 | 0.46% | 1147 |
| chr13 | 276736 | 0.24% | 592 |
| chr14 | 306813 | 0.29% | 623 |
| chr14_GL000225v1_random | 2817 | 1.33% | 7 |
| chr14_KI270722v1_random | 1212 | 0.62% | 2 |
| chr15 | 282537 | 0.28% | 511 |
| chr16 | 399421 | 0.44% | 736 |
| chr17 | 233960 | 0.28% | 435 |
| chr17_GL000205v2_random | 1044 | 0.56% | 2 |
| chr17_KI270729v1_random | 15016 | 5.35% | 20 |
| chr17_KI270730v1_random | 5513 | 4.90% | 11 |
| chr18 | 249634 | 0.31% | 511 |
| chr19 | 1287049 | 2.20% | 1762 |
| chr20 | 239802 | 0.37% | 480 |
| chr21 | 200698 | 0.43% | 368 |
| chr22 | 99796 | 0.20% | 190 |
| chr22_KI270735v1_random | 1587 | 3.71% | 2 |
| chr22_KI270736v1_random | 62463 | 34.34% | 76 |
| chr22_KI270738v1_random | 2281 | 2.30% | 6 |
| chrUn_GL000216v2 | 22379 | 12.67% | 27 |
| chrUn_GL000219v1 | 622 | 0.35% | 1 |
| chrUn_GL000224v1 | 3345 | 1.86% | 5 |
| chrUn_KI270438v1 | 6484 | 5.76% | 9 |
| chrUn_KI270442v1 | 37009 | 9.44% | 44 |
| chrUn_KI270519v1 | 678 | 0.49% | 2 |
| chrUn_KI270589v1 | 1866 | 4.20% | 2 |
| chrUn_KI270590v1 | 1030 | 21.99% | 2 |
| chrUn_KI270591v1 | 619 | 10.68% | 1 |
| chrUn_KI270744v1 | 317 | 0.19% | 1 |
| chrUn_KI270746v1 | 312 | 0.47% | 1 |
| chrUn_KI270751v1 | 1127 | 0.75% | 1 |
| chrUn_KI270756v1 | 294 | 0.37% | 1 |
| chrUn_KI270757v1 | 1442 | 2.02% | 2 |
| chrX | 85281 | 0.05% | 223 |
| chrY | 58808 | 0.10% | 123 |
| 3316 contigs with no values (125529670 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 22010 | 250 | 11912 | 523.78 | 433 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF168FBQ.bed.gz | 395.3 KB | 5099322db0035db0e15ac60a2a95bbaf |
| ENCFF168FBQ.tabix.bed.gz | 210.66 KB | 0baa85f7e2e1d0056cef3c9bc36abfaf |
| ENCFF168FBQ.tabix.bed.gz.tbi | 140.83 KB | 65760de8435f7da202e91c8e7c900261 |
| genomic_resource.yaml | 2.01 KB | 24b568df151c6e63f9ce0afe06243ac4 |
| statistics/ |