Resource

Id Histone_ChIP-seq/ENCSR566UMFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR566UMF [biosample_summary="Homo sapiens PC-3" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR566UMF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002074/
  • biosample_summary: Homo sapiens PC-3
  • date_created: 2014-02-20T05:43:24.048504+00:00
  • date_released: 2016-05-03
  • doi: 10.17989/ENCSR566UMF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR566UMF float

Histone_ChIP-seq_ENCSR566UMF
Histone_ChIP-seq ENCSR566UMF [biosample_summary="Homo sapiens PC-3" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR566UMF [1.44, 16.9]
n
151,971,095
mean
5.23
sd
1.91

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1519710954.72% 144989
chr1 15352671 6.17% 14046
chr2 13882504 5.73% 12864
chr3 11173386 5.63% 10231
chr4 7975922 4.19% 8181
chr5 9126460 5.03% 8709
chr6 9345030 5.47% 9183
chr7 7624890 4.79% 7504
chr8 8260044 5.69% 7329
chr9 5318515 3.84% 5337
chr10 7464578 5.58% 6913
chr11 7771090 5.75% 7089
chr12 7889693 5.92% 7469
chr13 3816869 3.34% 3971
chr14 5139641 4.80% 4660
chr15 4777562 4.68% 4476
chr16 2992387 3.31% 3198
chr17 5612956 6.74% 5341
chr18 3285723 4.09% 3248
chr19 2802948 4.78% 3234
chr20 4306854 6.68% 3855
chr21 1874215 4.01% 1705
chr22 1813454 3.57% 1843
chrX 4363703 2.80% 4603
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 144989 205 14461 1048.16 836
global segment-length histogram

Files

Filename Size md5
ENCFF248RSG.bed.gz 3.65 MB be09734214e5fb2cb8cd5c1fa279bded
ENCFF248RSG.tabix.bed.gz 1.54 MB 04d2afb1de84f6ded302fff310c0524f
ENCFF248RSG.tabix.bed.gz.tbi 380.8 KB 5ca47dfd9cc5b60254c8c24ba7e094c8
genomic_resource.yaml 2.09 KB 3209f2c3acd9896417e67cf10747845e
statistics/