Histone_ChIP-seq_ENCSR565XTT
Histone_ChIP-seq ENCSR565XTT [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K18ac"]
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| Id: | Histone_ChIP-seq/ENCSR565XTT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR565XTT [biosamplesummary="Homo sapiens mesendoderm originated from H1" and target="H3K18ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN613GGA|/analyses/ENCAN613GGA/} has in progress subobject document {3a816bc5-06f6-42c0-9ac1-7ed4e99519c4|/documents/3a816bc5-06f6-42c0-9ac1-7ed4e99519c4/} audit_internal_action: Released analysis {ENCAN613GGA|/analyses/ENCAN613GGA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF645DEY|/files/ENCFF645DEY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF645DEY|/files/ENCFF645DEY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.62. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR565XTT | float |
Histone_ChIP-seq_ENCSR565XTT |
Histone_ChIP-seq ENCSR565XTT [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K18ac"]
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[1.55, 19.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF326PLK.bed.gz | 1.62 MB | 9397ec63fb0f5f7e11a974e361375f7b |
| ENCFF326PLK.bed.gz.dvc | 101.0 B | 25af9880cc94de96ad7ffa2b842b596c |
| ENCFF326PLK.tabix.bed.gz | 764.14 KB | 98816c82ee3a39d12dcb94df13eb89d2 |
| ENCFF326PLK.tabix.bed.gz.dvc | 106.0 B | 9626faaf10640ce875695fda53db4078 |
| ENCFF326PLK.tabix.bed.gz.tbi | 274.66 KB | 7dd9dbf0c98b4ce9058d56057edbf849 |
| ENCFF326PLK.tabix.bed.gz.tbi.dvc | 110.0 B | e056b1ef063bc234c6bbc7c9c29b991e |
| genomic_resource.yaml | 2.95 KB | 9f21e8aa55c863aa1cf5a6cbf033c143 |
| genomic_resource_original.yaml | 2.82 KB | 3b518eac89272372c9e78d98140685f3 |
| statistics/ |