Resource
| Id | Histone_ChIP-seq/ENCSR565XTT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR565XTT [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K18ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN613GGA|/analyses/ENCAN613GGA/} has in progress subobject document {3a816bc5-06f6-42c0-9ac1-7ed4e99519c4|/documents/3a816bc5-06f6-42c0-9ac1-7ed4e99519c4/} audit_internal_action: Released analysis {ENCAN613GGA|/analyses/ENCAN613GGA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF645DEY|/files/ENCFF645DEY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF645DEY|/files/ENCFF645DEY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.62. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR565XTT | float |
Histone_ChIP-seq_ENCSR565XTT |
Histone_ChIP-seq ENCSR565XTT [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K18ac"]
|
 |
[1.55, 19.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 33821230 | 1.05% | 75492 |
| chr1 | 3291771 | 1.32% | 6947 |
| chr2 | 2671773 | 1.10% | 6195 |
| chr3 | 2336838 | 1.18% | 5530 |
| chr4 | 1628230 | 0.86% | 4019 |
| chr5 | 2105850 | 1.16% | 4953 |
| chr6 | 2044249 | 1.20% | 4687 |
| chr7 | 1639356 | 1.03% | 3770 |
| chr8 | 1682070 | 1.16% | 3914 |
| chr9 | 1304886 | 0.94% | 2940 |
| chr10 | 1737648 | 1.30% | 3748 |
| chr11 | 1811984 | 1.34% | 3958 |
| chr12 | 1850790 | 1.39% | 4031 |
| chr13 | 895329 | 0.78% | 2227 |
| chr14 | 1136107 | 1.06% | 2456 |
| chr15 | 973401 | 0.95% | 2064 |
| chr16 | 960415 | 1.06% | 2021 |
| chr17 | 1342262 | 1.61% | 2596 |
| chr18 | 966159 | 1.20% | 2196 |
| chr19 | 1005882 | 1.72% | 1986 |
| chr20 | 813302 | 1.26% | 1682 |
| chr21 | 329154 | 0.70% | 691 |
| chr22 | 563233 | 1.11% | 1116 |
| chrX | 694696 | 0.45% | 1673 |
| chrY | 35845 | 0.06% | 92 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 75492 | 150 | 5741 | 448.01 | 353 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF326PLK.bed.gz | 1.62 MB | 9397ec63fb0f5f7e11a974e361375f7b |
| ENCFF326PLK.tabix.bed.gz | 764.14 KB | 98816c82ee3a39d12dcb94df13eb89d2 |
| ENCFF326PLK.tabix.bed.gz.tbi | 274.66 KB | 7dd9dbf0c98b4ce9058d56057edbf849 |
| genomic_resource.yaml | 2.95 KB | 9f21e8aa55c863aa1cf5a6cbf033c143 |
| statistics/ |