Histone_ChIP-seq_ENCSR564IGJ
Histone_ChIP-seq ENCSR564IGJ [biosample_summary="Homo sapiens SK-N-SH" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR564IGJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR564IGJ [biosamplesummary="Homo sapiens SK-N-SH" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN102RKI|/analyses/ENCAN102RKI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN102RKI|/analyses/ENCAN102RKI/} has in progress subobject document {17179091-b535-41d2-9139-d14de56ca785|/documents/17179091-b535-41d2-9139-d14de56ca785/} audit_warning: Processed alignments file {ENCFF098JJI|/files/ENCFF098JJI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15311922 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF098JJI|/files/ENCFF098JJI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF098JJI|/files/ENCFF098JJI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.79. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR564IGJ | float |
Histone_ChIP-seq_ENCSR564IGJ |
Histone_ChIP-seq ENCSR564IGJ [biosample_summary="Homo sapiens SK-N-SH" and target="H3K27ac"]
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[1.58, 135] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF138VUT.bed.gz | 1.93 MB | be94e1a5a7204241b0fabf05966a6147 |
| ENCFF138VUT.bed.gz.dvc | 101.0 B | 7bd621135d0ee335b8622670cb1c916f |
| ENCFF138VUT.tabix.bed.gz | 804.39 KB | 913694a443485aff11c66935160b9109 |
| ENCFF138VUT.tabix.bed.gz.dvc | 106.0 B | 717ebeee6ea93f5cc92eb8e0a5a7af49 |
| ENCFF138VUT.tabix.bed.gz.tbi | 257.97 KB | f4df6143361c8de91937803e17c9e87e |
| ENCFF138VUT.tabix.bed.gz.tbi.dvc | 110.0 B | a0247a75332ab959f54b2de0efc4d6a1 |
| genomic_resource.yaml | 3.41 KB | 45d0b69242a079f76285fcdf0e271911 |
| genomic_resource_original.yaml | 3.3 KB | f0ceff58761da44f0dfbf6c561de1023 |
| statistics/ |