Histone_ChIP-seq_ENCSR562MOC
Histone_ChIP-seq ENCSR562MOC [biosample_summary="Homo sapiens GM23248" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR562MOC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR562MOC [biosamplesummary="Homo sapiens GM23248" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN107NIV|/analyses/ENCAN107NIV/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN107NIV|/analyses/ENCAN107NIV/} has in progress subobject document {fc0bc78a-e658-47b8-a9fe-f3c29bd791c4|/documents/fc0bc78a-e658-47b8-a9fe-f3c29bd791c4/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF408XMV|/files/ENCFF408XMV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF408XMV|/files/ENCFF408XMV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.66. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF861SJP|/files/ENCFF861SJP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF861SJP|/files/ENCFF861SJP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.35. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR562MOC | float |
Histone_ChIP-seq_ENCSR562MOC |
Histone_ChIP-seq ENCSR562MOC [biosample_summary="Homo sapiens GM23248" and target="H3K9ac"]
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[1.62, 84.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF723JVC.bed.gz | 1.67 MB | db3d6dd82fbfcd0b4c2d7bd4b942b7f0 |
| ENCFF723JVC.bed.gz.dvc | 101.0 B | 61e5b13ee4e00e48e87ce12ef6406c21 |
| ENCFF723JVC.tabix.bed.gz | 697.14 KB | 1d358fd8acbc0f838ab5a8fdf88cdc00 |
| ENCFF723JVC.tabix.bed.gz.dvc | 106.0 B | 6b3568952c6f967a4211075c6062840c |
| ENCFF723JVC.tabix.bed.gz.tbi | 245.07 KB | 786241e4e550980616f667bd87da9ca4 |
| ENCFF723JVC.tabix.bed.gz.tbi.dvc | 110.0 B | a95e7452ca0a9f296fe04f34762275cc |
| genomic_resource.yaml | 4.22 KB | 3de86f27d35b73791090c42038a8a337 |
| genomic_resource_original.yaml | 4.11 KB | 71922bb0574dcfc654afe278228e934b |
| statistics/ |