Resource
| Id | Histone_ChIP-seq/ENCSR562JTY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR562JTY [biosample_summary="Homo sapiens NCI-H929" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN728ERO|/analyses/ENCAN728ERO/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF997XOK|/files/ENCFF997XOK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 30097369 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF479IOR|/files/ENCFF479IOR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 22890667 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR562JTY | float |
Histone_ChIP-seq_ENCSR562JTY |
Histone_ChIP-seq ENCSR562JTY [biosample_summary="Homo sapiens NCI-H929" and target="H3K36me3"]
|
 |
[1.46, 6.75] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 48573731 | 1.51% | 65678 |
| chr1 | 5531911 | 2.22% | 6736 |
| chr2 | 3885216 | 1.60% | 5478 |
| chr3 | 3263395 | 1.65% | 4690 |
| chr4 | 2061344 | 1.08% | 3109 |
| chr5 | 4580500 | 2.52% | 5684 |
| chr6 | 2134849 | 1.25% | 3061 |
| chr7 | 1961597 | 1.23% | 2859 |
| chr8 | 2716547 | 1.87% | 3493 |
| chr9 | 1958733 | 1.42% | 2771 |
| chr10 | 1816680 | 1.36% | 2576 |
| chr11 | 2884150 | 2.14% | 3594 |
| chr12 | 2386243 | 1.79% | 3282 |
| chr13 | 37725 | 0.03% | 81 |
| chr14 | 1669746 | 1.56% | 2361 |
| chr15 | 1796194 | 1.76% | 2571 |
| chr16 | 1672258 | 1.85% | 2279 |
| chr17 | 2149987 | 2.58% | 2981 |
| chr18 | 1089275 | 1.36% | 1531 |
| chr19 | 1762056 | 3.01% | 2294 |
| chr20 | 1399589 | 2.17% | 1633 |
| chr21 | 513192 | 1.10% | 757 |
| chr22 | 789508 | 1.55% | 1112 |
| chrX | 513036 | 0.33% | 745 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 65678 | 203 | 12116 | 739.57 | 590 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF733GLI.bed.gz | 1.38 MB | 0621486b9b8c6239eae255935b07bac3 |
| ENCFF733GLI.tabix.bed.gz | 670.93 KB | 14fa6f6cd9bb02d5112afdec45931ddd |
| ENCFF733GLI.tabix.bed.gz.tbi | 163.46 KB | 45d74f1bd18a7381e76c2763adf2dc49 |
| genomic_resource.yaml | 2.4 KB | 71dfa55d94cbe9a0cf71abe0a885c5d0 |
| statistics/ |