Histone_ChIP-seq_ENCSR561YSH
Histone_ChIP-seq ENCSR561YSH [biosample_summary="Homo sapiens sigmoid colon tissue male adult (34 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR561YSH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR561YSH [biosamplesummary="Homo sapiens sigmoid colon tissue male adult (34 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN603HQN|/analyses/ENCAN603HQN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF012NGZ|/files/ENCFF012NGZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18806875 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF012NGZ|/files/ENCFF012NGZ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF012NGZ|/files/ENCFF012NGZ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.05. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR561YSH | float |
Histone_ChIP-seq_ENCSR561YSH |
Histone_ChIP-seq ENCSR561YSH [biosample_summary="Homo sapiens sigmoid colon tissue male adult (34 years)" and target="H3K27ac"]
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[1.42, 88.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF962IBR.bed.gz | 1.97 MB | 83bfe316873b726f9b0ed1e6efa5877e |
| ENCFF962IBR.bed.gz.dvc | 101.0 B | f1a77c9c5059926ea4088dd24512e862 |
| ENCFF962IBR.tabix.bed.gz | 903.2 KB | a4f1eab936283d2d2ae06b25d630bc46 |
| ENCFF962IBR.tabix.bed.gz.dvc | 106.0 B | bcb02c12c333967f0bb49a90147dd691 |
| ENCFF962IBR.tabix.bed.gz.tbi | 236.91 KB | 3b80c99973da5b7ab3cdb46fb97a9cc3 |
| ENCFF962IBR.tabix.bed.gz.tbi.dvc | 110.0 B | 5f01dceda2ff716191184679c56d33ee |
| genomic_resource.yaml | 3.23 KB | fc12f9a4edc73d9bc0588f2e5851e68d |
| genomic_resource_original.yaml | 3.09 KB | 13fdf20d7d7f2c6a9f1cff5f456bb7d6 |
| statistics/ |