Resource

Id Histone_ChIP-seq/ENCSR561KOMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR561KOM [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (21 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR561KOM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell male adult (21 years)
  • date_created: 2015-09-16T21:42:02.628687+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR561KOM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years)
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR561KOM float

Histone_ChIP-seq_ENCSR561KOM
Histone_ChIP-seq ENCSR561KOM [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (21 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR561KOM [1.84, 118]
n
39,104,537
mean
13.5
sd
12.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 391045371.22% 36872
chr1 4090995 1.64% 3641
chr1_KI270713v1_random 624 1.53% 1
chr2 3098530 1.28% 2839
chr3 2305055 1.16% 2218
chr4 1286367 0.68% 1234
chr5 2019055 1.11% 1819
chr6 2361208 1.38% 2243
chr7 1641312 1.03% 1608
chr8 1262901 0.87% 1286
chr9 1411201 1.02% 1326
chr10 1796481 1.34% 1674
chr11 2157968 1.60% 1925
chr12 2098894 1.57% 1940
chr13 883325 0.77% 796
chr14 1704708 1.59% 1419
chr15 1260779 1.24% 1149
chr16 1366577 1.51% 1433
chr17 2198148 2.64% 2139
chr17_GL000205v2_random 1142 0.62% 1
chr18 604839 0.75% 558
chr19 1916703 3.27% 1972
chr20 1025516 1.59% 1014
chr21 422914 0.91% 422
chr22 1012387 1.99% 994
chrX 1126518 0.72% 1177
chrY 50390 0.09% 44
3340 contigs with no values (128850749 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36872 190 24613 1060.55 730
global segment-length histogram

Files

Filename Size md5
ENCFF449ITG.bed.gz 882.48 KB 8a4b46a3d221cc6ed79f40b7b854d4ad
ENCFF449ITG.tabix.bed.gz 399.61 KB a68c06f67bae46aa09ba72238ccbcf9e
ENCFF449ITG.tabix.bed.gz.tbi 134.51 KB 13d60bc254ffdfe5098a325b307e4789
genomic_resource.yaml 1.54 KB c0c6a42a7b0e1886cd42de6aecc202a3
statistics/