Histone_ChIP-seq_ENCSR560XLD
Histone_ChIP-seq ENCSR560XLD [biosample_summary="Homo sapiens heart left ventricle tissue female adult (56 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR560XLD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR560XLD [biosamplesummary="Homo sapiens heart left ventricle tissue female adult (56 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (56 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN055SMD|/analyses/ENCAN055SMD/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF854SIK|/files/ENCFF854SIK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF854SIK|/files/ENCFF854SIK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR560XLD | float |
Histone_ChIP-seq_ENCSR560XLD |
Histone_ChIP-seq ENCSR560XLD [biosample_summary="Homo sapiens heart left ventricle tissue female adult (56 years)" and target="H3K4me3"]
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[1.84, 83.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF506RLO.bed.gz | 861.65 KB | 76e1546decc438379b5d97a13fbe456c |
| ENCFF506RLO.bed.gz.dvc | 100.0 B | d0f1038c41bbe37629b2a1942319bc63 |
| ENCFF506RLO.tabix.bed.gz | 378.9 KB | 48624ed9813ff281cb89a93abc823e42 |
| ENCFF506RLO.tabix.bed.gz.dvc | 106.0 B | 0ef92b25d97c9c74561a383a4bb8dafa |
| ENCFF506RLO.tabix.bed.gz.tbi | 187.76 KB | 2fa49062866c3cdb5319a8382f5e286b |
| ENCFF506RLO.tabix.bed.gz.tbi.dvc | 110.0 B | 6663f33f8cc16ce8d6c0afeca7f4d5b9 |
| genomic_resource.yaml | 2.8 KB | eea84b5acea5be48a3bcab52733ce014 |
| genomic_resource_original.yaml | 2.65 KB | 153ebdd64a717e4515621e2181bbd8bb |
| statistics/ |