Histone_ChIP-seq_ENCSR560IDY
Histone_ChIP-seq ENCSR560IDY [biosample_summary="Homo sapiens skeletal muscle tissue tissue" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR560IDY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR560IDY [biosamplesummary="Homo sapiens skeletal muscle tissue tissue" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN803QRY|/analyses/ENCAN803QRY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF547ZOC|/files/ENCFF547ZOC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF547ZOC|/files/ENCFF547ZOC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.49. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR560IDY | float |
Histone_ChIP-seq_ENCSR560IDY |
Histone_ChIP-seq ENCSR560IDY [biosample_summary="Homo sapiens skeletal muscle tissue tissue" and target="H3K9ac"]
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[1.85, 55.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF606ACB.bed.gz | 1.23 MB | fb1845ba45e58c663cfd36e5a19ecf17 |
| ENCFF606ACB.bed.gz.dvc | 101.0 B | 76086d0a8edd956e8161acbcaf0a7e1a |
| ENCFF606ACB.tabix.bed.gz | 608.86 KB | a63171d8731b84261a97ef2238792476 |
| ENCFF606ACB.tabix.bed.gz.dvc | 106.0 B | 0d4bcc6faf2b5d5583ea5dbd4c1f0a47 |
| ENCFF606ACB.tabix.bed.gz.tbi | 213.61 KB | 3b9a08490c726198e883ffcc125c9a12 |
| ENCFF606ACB.tabix.bed.gz.tbi.dvc | 110.0 B | de5dc9b0c9f606985f1d15abf04d7840 |
| genomic_resource.yaml | 2.75 KB | 446338989e65a0736fa84b2a020b50bc |
| genomic_resource_original.yaml | 2.62 KB | 7222606dd48e7d7a12ec893de606ae6e |
| statistics/ |