Histone_ChIP-seq_ENCSR559IFS
Histone_ChIP-seq ENCSR559IFS [biosample_summary="Homo sapiens NCI-H929" and target="H2AFZ"]
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| Id: | Histone_ChIP-seq/ENCSR559IFS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR559IFS [biosamplesummary="Homo sapiens NCI-H929" and target="H2AFZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN523WKX|/analyses/ENCAN523WKX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF477WIN|/files/ENCFF477WIN/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 18993481 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AFZ-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF477WIN|/files/ENCFF477WIN/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF477WIN|/files/ENCFF477WIN/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR559IFS | float |
Histone_ChIP-seq_ENCSR559IFS |
Histone_ChIP-seq ENCSR559IFS [biosample_summary="Homo sapiens NCI-H929" and target="H2AFZ"]
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[1.54, 13.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF813NNK.bed.gz | 1.53 MB | e14ef9447d7a4469dedd8c6223f73e2c |
| ENCFF813NNK.bed.gz.dvc | 101.0 B | 0d20313fbbabdad2f127b44f9529b5bd |
| ENCFF813NNK.tabix.bed.gz | 705.24 KB | 40e5796210e84758ba7fb6272c0b8f12 |
| ENCFF813NNK.tabix.bed.gz.dvc | 106.0 B | 17c87a5abc8e91a5e6688e3555191477 |
| ENCFF813NNK.tabix.bed.gz.tbi | 343.92 KB | 280da08a5c712da546e4377b63346bea |
| ENCFF813NNK.tabix.bed.gz.tbi.dvc | 110.0 B | c462958b20afd59e1cc45e8dd4a18a56 |
| genomic_resource.yaml | 3.19 KB | 2c95418ca7f0d8890e44e9faaabc8f29 |
| genomic_resource_original.yaml | 3.08 KB | e98a5437bb433014d9dffa162ecffdb6 |
| statistics/ |