Histone_ChIP-seq_ENCSR558XOU
Histone_ChIP-seq ENCSR558XOU [biosample_summary="Homo sapiens iPS-15b" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR558XOU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR558XOU [biosamplesummary="Homo sapiens iPS-15b" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN524QIH|/analyses/ENCAN524QIH/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN524QIH|/analyses/ENCAN524QIH/} has in progress subobject document {8c9d6cb3-72ef-4d26-9fdf-5f1f87f8a88f|/documents/8c9d6cb3-72ef-4d26-9fdf-5f1f87f8a88f/} audit_not_compliant: Processed unfiltered alignments file {ENCFF198HRF|/files/ENCFF198HRF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 26731048 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF229YIF|/files/ENCFF229YIF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF229YIF|/files/ENCFF229YIF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.81. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR558XOU | float |
Histone_ChIP-seq_ENCSR558XOU |
Histone_ChIP-seq ENCSR558XOU [biosample_summary="Homo sapiens iPS-15b" and target="H3K9me3"]
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[2.07, 17] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF281GRX.bed.gz | 498.0 KB | 5b4ecdb22ee75039973d4f3acd3259b6 |
| ENCFF281GRX.bed.gz.dvc | 100.0 B | a19776c349292d75754d1c365e2000e4 |
| ENCFF281GRX.tabix.bed.gz | 264.38 KB | e7d6b5ef7396cd139476c4889bcb931f |
| ENCFF281GRX.tabix.bed.gz.dvc | 106.0 B | 6a3ae94e60acee6f8b05708dcfbdf1d7 |
| ENCFF281GRX.tabix.bed.gz.tbi | 133.62 KB | 4231972439e9a605b2f04487a2140646 |
| ENCFF281GRX.tabix.bed.gz.tbi.dvc | 110.0 B | 1a6b9c276e36df4efe7e1d255ccff1ac |
| genomic_resource.yaml | 3.42 KB | 50b2334e3112c75967d091903bc2d5d0 |
| genomic_resource_original.yaml | 3.31 KB | 359a56452d25b4908e894dab51ee6e3b |
| statistics/ |